View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_2 (Length: 504)
Name: NF15239_low_2
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 49589080 - 49589569
Alignment:
| Q |
1 |
tccttttcttcagtttattttatcatataattacttcagtttcatctaattgacacagagaatattttatcaaaaactccaaagcaaaccaacaaaattg |
100 |
Q |
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| T |
49589080 |
tccttttcttcaatttattttatcatataattacttcagtttcatctaattgacacaaagaatattttatcaaaaactccaaagcaaaccaacaaaattg |
49589179 |
T |
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| Q |
101 |
cagtctacctcctactaaactcgccaaaaccacagcgcaaaacaattattaggagaaatatataactaacattaccttaaaatttgattctagtattaag |
200 |
Q |
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| T |
49589180 |
cagtctacctcctactacactcgccaaaaccacagcgcaaaacaattattaggagaaatatataactaacattaccttaaaatttgattgtagtattaag |
49589279 |
T |
|
| Q |
201 |
aaagtttaattttacaaatagattaatttttatgggac--atgatgtaattatttatttatttactcggagtagttgttgaaactcgaaagagatagttc |
298 |
Q |
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| T |
49589280 |
aaagtttaattttacaaatagattaatttttatgggacggatgatgtaattatttatttatttactcggagtagttgttgaaactcgaaagagatagttc |
49589379 |
T |
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| Q |
299 |
atttttgtcatcttcgaaattgtgtctcttggtgtacatgtatatatagcattcaacggtggaagatgttacaagcaagcactcgatatttgaaaatgaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49589380 |
atttttgtcatcttcgaaattgtgtctcttggtgtacatgtatatatagcattcaaaggtggaagatgttacaagcaagcactcgatatttgaaaatgaa |
49589479 |
T |
|
| Q |
399 |
cttgtttgtccacctactatgtctaaccgttaactaataaagagtgcatgatgtggggaatccctaaccccaccaattatttgttctaac |
488 |
Q |
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| T |
49589480 |
cttgtttgtccacctactatgtctaaccgttaactaataaagagtgcatgatgtggggaatccctaaccccaccaattatttgttctaac |
49589569 |
T |
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