View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_3 (Length: 376)
Name: NF15239_low_3
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 44899976 - 44899624
Alignment:
| Q |
9 |
gattatactatatttaacctaagagctaatcatggttcttcaaatttacagtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtc |
108 |
Q |
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| T |
44899976 |
gattataatatatttaacctaagagctaatcatggttcttcaaatttacagtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtc |
44899877 |
T |
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| Q |
109 |
cgctcttgtatctaaacccctcaggttttgacacatgaagagctaacacatttccagcagggtaaacatccaccttcaaatatgacataaacaatctggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44899876 |
cgctcttgtatctaaacccctcaggttttgacacatgaagagctaacacatttccagcagggtaaacagccaccttcaaatatgacataaacaatctggt |
44899777 |
T |
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| Q |
209 |
cagacatgcattttgagataggagtannnnnnnngttcccttttatgcatgtaacttttaaatattagccaaaaggtaagagctaacatcaannnnnnnn |
308 |
Q |
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| T |
44899776 |
cagacatgcattttgagataggagtattttttttgttcccttttatgcatgtaacttttaaatattagccaaaaggtaagagctaacatcaatttttttt |
44899677 |
T |
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| Q |
309 |
nncttccaaaattcaagaaactaagtcctttgtttgtctaatgaattaataat |
361 |
Q |
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| T |
44899676 |
ttcttccaaaattcaagaaactaagtcctttgtttgtctaatgaattaataat |
44899624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 44916174 - 44915992
Alignment:
| Q |
34 |
ctaatcatggttcttcaaatttacagtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcagg |
133 |
Q |
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| T |
44916174 |
ctaattatgtttcttcaaattcgtagtaccattcaaatggagagacagcagcacaatttacaaacatgtattgtccactcttgtatctaaacccctgagg |
44916075 |
T |
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| Q |
134 |
ttttgacacatgaagagctaacacatttccagcagggtaaacatccaccttcaaatatgacataaacaatctggtcagacatgcat |
219 |
Q |
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| T |
44916074 |
ctttgacatatgaagagccaacacatttc---caggataaacagccaccttcaaataggacacacaaaatttggtcagacatgcat |
44915992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 44886480 - 44886392
Alignment:
| Q |
60 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacatgaag |
148 |
Q |
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| T |
44886480 |
taccattcaaatggagagacattagcacattttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacacgaag |
44886392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 39983686 - 39983554
Alignment:
| Q |
60 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacatgaagagctaacacat |
159 |
Q |
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|||||||||| |||||| |||||||||||||| |||| |||||| ||||| ||||| || ||||| || | ||| ||||||| || || || ||||||| |
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| T |
39983686 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacat |
39983587 |
T |
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| Q |
160 |
ttccagcagggtaaacatccaccttcaaatatgaca |
195 |
Q |
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||| |||| |||||| |||||||||||| ||||| |
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| T |
39983586 |
ttc---caggataaacagccaccttcaaatttgaca |
39983554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 41557624 - 41557566
Alignment:
| Q |
60 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgta |
118 |
Q |
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| T |
41557624 |
taccactcaaacggagagacagcagcacattgtacaaacatgtattgtccgcttttgta |
41557566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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