View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_4 (Length: 369)
Name: NF15239_low_4
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_4 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 9168345 - 9167996
Alignment:
| Q |
20 |
ggatccatacgcattccatgattattctaggccggagcatgtagtatacttgaactgtaacaagcaactgaagaacgatcctatgtatttggatacatct |
119 |
Q |
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| T |
9168345 |
ggatccatacgcattccatgattattctaggccggagcatgtagtatacttgaactgtagcaagcaactgaagaacgatcctatgtatgtggatacatct |
9168246 |
T |
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| Q |
120 |
acgtgtagactgaactccgaaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgtta |
219 |
Q |
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| T |
9168245 |
acgtgtagactgaactccgaaaataacagctatatttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgtta |
9168146 |
T |
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| Q |
220 |
ctatgtcatcagctttagcttttatctccaagaaagattttcaacatttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtg |
319 |
Q |
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| T |
9168145 |
ctatgtcatcagctttagcttttatctccaagaaagattttcaacctttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtg |
9168046 |
T |
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| Q |
320 |
gataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgct |
369 |
Q |
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| T |
9168045 |
gataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgct |
9167996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 54 - 369
Target Start/End: Original strand, 9307086 - 9307401
Alignment:
| Q |
54 |
gagcatgtagtatacttgaactgtaacaagcaactgaagaacgatcctatgtatttggatacatctacgtgtagactgaactccgaaaataacagctata |
153 |
Q |
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| T |
9307086 |
gagcacgtaatatacttgaactgtagcaatcaagtgaagaacgatcctctgtacgtggatacatctccgtgtagaatcaactctgcaaataacagctatg |
9307185 |
T |
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| Q |
154 |
tttatgcaattgctggggactttagagttgttaaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaa |
253 |
Q |
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| T |
9307186 |
tttatgcaattgatagggactttagtgttggtgaattaaatgttggttgccgtgtgaagattgttactatatcatcagctccagctttaatcgtcaccga |
9307285 |
T |
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| Q |
254 |
agattttcaacatttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatg |
353 |
Q |
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| T |
9307286 |
gggaagacaaccttttccgtacaaggaaattcatagacttctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgacaat |
9307385 |
T |
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| Q |
354 |
aaccaacaaaactgct |
369 |
Q |
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| T |
9307386 |
aacaatcaaaactgct |
9307401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 9475678 - 9475842
Alignment:
| Q |
186 |
aaattgaatgttggttgccgcgtgaagcttgttactatgtcatcagctttagcttttatctccaagaaagattttcaacatttttcatatgtggaaattc |
285 |
Q |
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| T |
9475678 |
aaattaaatattgattgccacgtgaagcttgttgctatgtcagcagctcctgcttttatctctcggagtgatcaacaccatttttcttacgcggaaattc |
9475777 |
T |
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| Q |
286 |
atcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgac |
350 |
Q |
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| || | |||||||||||||||||| |||||||||| | || |||||||||||| ||||||| |
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| T |
9475778 |
acggaatgctaagctatggatttgaaatttcgtggattacacgtgcttgtgaagatttttgtgac |
9475842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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