View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15239_low_6 (Length: 326)
Name: NF15239_low_6
Description: NF15239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15239_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 3350437 - 3350745
Alignment:
| Q |
1 |
agagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaat |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3350437 |
agagtagcttgcaagcaagcgtaacatacggtcgagccgatttggcaaatcagagtgttgagttggtaagtttgaagcaatttcaatggctgacttgaat |
3350536 |
T |
|
| Q |
101 |
ccatcaccaatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3350537 |
ccatccccaatgatttcaaacaagttgagttgaattgcagcattaagaactgctggaaacaccaaattggaacctagtaccatggctgagagtgtctcat |
3350636 |
T |
|
| Q |
201 |
tgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactcatgtttgnnnnnnnggcttatactttttgtgattc |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
3350637 |
tgtcatctatttgtggggtgtgagtttcaacaacatggttcactttgtcattggaattggaactcatgtttgtttttttggcttatactttttgtgattc |
3350736 |
T |
|
| Q |
301 |
tttgattgt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
3350737 |
tttgattgt |
3350745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 3299457 - 3299740
Alignment:
| Q |
1 |
agagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaat |
100 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
3299457 |
agagtagctagctagcatgcgcaacatacgatctaacctatttggcaagtcagagtgttgagttggtaactttgaagcaatttcaaaggctgacatgaaa |
3299556 |
T |
|
| Q |
101 |
---ccatcac---------caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctg |
188 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |||||| || |||||||||||||| || |||| ||||| |||||| ||||||||| |
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| T |
3299557 |
tcaccattactttccttagcaatgatttcaaacaagttgagttcaattgcggcgttaagaactgcaggaaacaccatattggcacctagcaccatggcta |
3299656 |
T |
|
| Q |
189 |
agagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactcatgtttg |
272 |
Q |
| |
|
|||| || ||| | |||||||||||||| ||| | |||| || | || |||| |||| ||||| |||||||||| |||||||| |
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|
| T |
3299657 |
agagggtatcactatcatctatttgtggagtgaaagtttccactatattgttctctttctcatttgaataggaacccatgtttg |
3299740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3372562 - 3372834
Alignment:
| Q |
1 |
agagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaat |
100 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||| || |||| ||||| |
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|
| T |
3372562 |
agagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgacatgaat |
3372661 |
T |
|
| Q |
101 |
ccatcacca------------atgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctg |
188 |
Q |
| |
|
||| || | ||||| ||||| || ||||||| ||||||||| |||||||||||||| || |||| ||| | ||| |||||||| || | |
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|
| T |
3372662 |
ccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccatagcag |
3372761 |
T |
|
| Q |
189 |
agagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaatagga |
261 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||||| |||||| |
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|
| T |
3372762 |
agagtgtatcattgtcatctatttgtggggtgtgacattcaaccacatgattctctttctcattggtatagga |
3372834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3361811 - 3362083
Alignment:
| Q |
1 |
agagtagcttgctagcaagcgtaacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaat |
100 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||| || || ||||||| ||||||||||||||||| || |||| ||||| |
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|
| T |
3361811 |
agagtagcttgcaagcaatcgaaacatgcgatcaagcctattcggtaaatcagaatgctgtgttggtagctttgaagcaatttcaaaggatgacatgaat |
3361910 |
T |
|
| Q |
101 |
ccatcac------------caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctg |
188 |
Q |
| |
|
||| || ||||||| ||||| || | ||||| ||||||||| |||||||||||||| || |||| ||| | ||| |||||||| || | |
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|
| T |
3361911 |
ccaccattactttccttagcaatgatatcaaataaatggagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccatagcag |
3362010 |
T |
|
| Q |
189 |
agagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaatagga |
261 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||||| |||||| |
|
|
| T |
3362011 |
agagtgtatcattgtcatctatttgtggggtgtgagattcaaccacatgattctctttctcattggtatagga |
3362083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 3390839 - 3391002
Alignment:
| Q |
108 |
caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatc |
207 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| ||||||||| || |||| ||||||||||| | ||||||| |||| || || | ||||| |
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|
| T |
3390839 |
caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggaacctataatcatggctaagagggtaccactatcatc |
3390938 |
T |
|
| Q |
208 |
tatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactcatgttt |
271 |
Q |
| |
|
||||||||||||| || |||| || ||||||||| |||| ||||||| |||||||| ||||||| |
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|
| T |
3390939 |
tatttgtggggtgagagtttccactacatggttctctttatcattggtataggaacccatgttt |
3391002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 3405185 - 3405349
Alignment:
| Q |
108 |
caatgatttcaaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcattgtcatc |
207 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||| ||||||||| || |||| ||||| |||||| | ||||||| |||| || ||| | ||||| |
|
|
| T |
3405185 |
caatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggcacctagaatcatggctaagagggtatcactatcatc |
3405284 |
T |
|
| Q |
208 |
tatttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactcatgtttg |
272 |
Q |
| |
|
||||||| ||||| | ||| || ||||||| |||| |||||| ||||||||| |||||||| |
|
|
| T |
3405285 |
tatttgtagggtgacagttttgactgcatggttttctttctcattgaaataggaacccatgtttg |
3405349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 3347182 - 3347274
Alignment:
| Q |
164 |
aaattggaacctagtaccatggctgagagtgtctcattgtcatctatttgtggggtgtgattttcaacaacatggttcactttgtcattggaa |
256 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| ||| | ||||||||||||||||||||| ||||| ||||||| |||| ||||||||| |
|
|
| T |
3347182 |
aaattggcacctagcaccatagctgagagtgtatcactatcatctatttgtggggtgtgagattcaatttcatggttttctttctcattggaa |
3347274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 20721126 - 20721387
Alignment:
| Q |
23 |
aacatacgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaatccatcac------caatgattt |
116 |
Q |
| |
|
|||||||| ||||| ||||| || ||||| ||||||||||||||||||||| |||||||||| ||| ||| | |||||| || ||||||| | |
|
|
| T |
20721126 |
aacatacggtcgagtctatttggtaaatcggagtgttgagttggtaactttaaagcaatttcgtaggccgacataaatccaccattactagcaatgatat |
20721225 |
T |
|
| Q |
117 |
caaacaagttgagttgaattgcagcattaagaactgcagggaaaaccaaattggaacctagtaccatggctgagagtgtctcatt---gtcat---ctat |
210 |
Q |
| |
|
|||| || ||||| | ||||||||||||||||| |||||| ||||||| | | |||||||| ||||| || | ||||| | | | ||||| |||| |
|
|
| T |
20721226 |
caaataatttgagctcaattgcagcattaagaattgcaggaaaaaccatagtagaacctagaaccatagcaggaagtgtattactactgtcatgatctat |
20721325 |
T |
|
| Q |
211 |
ttgtggggtgtgattttcaacaacatggttcactttgtcattggaataggaactcatgtttg |
272 |
Q |
| |
|
|||||| |||||| |||| |||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
20721326 |
ttgtggagtgtgaatttctacaacatggttctctttgccattggaataggaactcatgtttg |
20721387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 23993053 - 23992916
Alignment:
| Q |
28 |
acgatcgagcctattcggcaaatcagagtgttgagttggtaactttgaagcaatttcaatggctgacttgaatccatcac---------caatgatttca |
118 |
Q |
| |
|
||||||||| ||||| || || || ||||||||| ||||||| |||||||||||||||| | | ||| | ||||||||| ||||||| ||| |
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|
| T |
23993053 |
acgatcgagtctatttggtaagtcggagtgttgatttggtaagtttgaagcaatttcaaagacagacataaatccatcattgctggtagcaatgatatca |
23992954 |
T |
|
| Q |
119 |
aacaagttgagttgaattgcagcattaagaactgcagg |
156 |
Q |
| |
|
|| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
23992953 |
aataatttgagttcaattgcagcattaagaactgcagg |
23992916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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