View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_10 (Length: 444)
Name: NF1523_high_10
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 33397874 - 33398136
Alignment:
| Q |
14 |
aatatactaacaaattaataacattgacaaacgaagaaggagaaccatggagtgtaacatcttgaattgatgaagagaaacttgactgattgagtctatc |
113 |
Q |
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| T |
33397874 |
aatatactaacaaattaataacattgacaaacgaagaaggagaaccatggaatgtaacatcttgaattgatgaagagaaactagactgattgagtctatc |
33397973 |
T |
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| Q |
114 |
acactatcaaatcatctagaggtatagttccgaacgacnnnnnnnnntattcattttgacttttttggagtctgtgagttgaaactcgtgttgggggaga |
213 |
Q |
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| T |
33397974 |
acactatcaaatcatctagaggtatagttccgaacgac--aaaaaaatattcattttgacttttttcgagtctgtgagttgaaacttgtgttgggggaga |
33398071 |
T |
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| Q |
214 |
gtaaacgaaatctccaaatatgaaagagcaagaccttgaattgatgaagaggaacgtgctttatc |
278 |
Q |
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| T |
33398072 |
gtaaacgaaatctccaaatatgaaagagcaagaccttgaattgatgaagaggaacgtgctttatc |
33398136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 278 - 372
Target Start/End: Original strand, 33398170 - 33398276
Alignment:
| Q |
278 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaaga------------ggggaggagtaaagagaaaaatagagaattctttggattttgag |
365 |
Q |
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| T |
33398170 |
caacaccaaacaaaaccctttcgctttgtttacgagtttgaagaggggaggtatgtggggaggagtaaagagaaaaatagagaattctttggattttgag |
33398269 |
T |
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| Q |
366 |
aaaacgt |
372 |
Q |
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| T |
33398270 |
aaaacgt |
33398276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 33398309 - 33398364
Alignment:
| Q |
371 |
gtctccagaaagcatctcatcgcggctttgatatcagcatgaagggtagacatctt |
426 |
Q |
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| T |
33398309 |
gtctctagaaagcatcgcatcgcggctttgatatcagcatgaaggatagacatctt |
33398364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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