View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_23 (Length: 370)
Name: NF1523_high_23
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 12067949 - 12067613
Alignment:
| Q |
19 |
atttacttagtcttaagtatggttactattattatttttaccataatatgaacaaaatgtaggaagatatcgatatcttcgaatattttt--ctttaaaa |
116 |
Q |
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| T |
12067949 |
atttacttagtcttaagtatggtcactattattatttt-accataatatgaacaaaatgtaagaagatatcgatatcttcgaatatttttttctataaaa |
12067851 |
T |
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| Q |
117 |
atgattcttataaatcaaagttcgcacgtggagttatcaaaacc-aaaagnnnnnnngttcacatggagctattactggttatatttgtggaactgttct |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12067850 |
atgattcttataaatcaaagttcacacgtggagttatcaaaaccaaaaagaaaaaaagttcacatggagctattactggctatatttgtggaactgttct |
12067751 |
T |
|
| Q |
216 |
agtagctagtactactgattgagtgatataggaattattcctcnnnnnnngtg---tatttattcatgcagtgaaatgaaaaaggaaggaaaattcattg |
312 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||| |
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| T |
12067750 |
agtagctagtactactgattaagtgatatcggaattattcctcaaaaaaagtgtattattcattcatgcagtgaaatgaaaaa-----------tcattg |
12067662 |
T |
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| Q |
313 |
atggg-aaaataagtggctagtgaatctgacagtacttctttatctgtg |
360 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12067661 |
atgggaaaaataagtggctagtgaatctgacagtacttctttatctgtg |
12067613 |
T |
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