View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_high_24 (Length: 369)
Name: NF1523_high_24
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 7499834 - 7499702
Alignment:
| Q |
11 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaat |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
7499834 |
attattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatat-gcactatctgttaatacatggctggttttagaat |
7499736 |
T |
|
| Q |
111 |
gatgtctcagttttttatgtttcttgatcatgaa |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
7499735 |
gatgtctcagttttttatgtttctagatcatgaa |
7499702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 7488416 - 7488218
Alignment:
| Q |
143 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
242 |
Q |
| |
|
|||||||||||||| | || ||||||||| ||| || |||||| |||||||||||| |||||||||||| ||| ||||| |||||||||| || |||||| |
|
|
| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
|
| Q |
243 |
ccaacaacgtctttc---atcctataagaatagaatcctatggtagtggcaacggtgttttctgtcttaaacgtttgtgtcggttccataaaagttgtc |
338 |
Q |
| |
|
|||||| | | || | ||||||||| ||||| ||||||||| |||| || ||||||||||| || |||||||| |||| ||||| ||||||| |
|
|
| T |
7488316 |
ccaacagcaattgtcgcacttttataagaatggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtc |
7488218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 319
Target Start/End: Complemental strand, 7475532 - 7475400
Alignment:
| Q |
187 |
accctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaacgtctttcatcctataagaatagaatcctatggtagt |
286 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||| ||||||||| || |||||||| |||| | ||| ||||||| ||| ||||| ||||||||| |
|
|
| T |
7475532 |
accctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacctataacaattgaatcatatggtagt |
7475433 |
T |
|
| Q |
287 |
ggcaacggtgttttctgtcttaaacgtttgtgt |
319 |
Q |
| |
|
||| |||||||||||||| ||| |||||||| |
|
|
| T |
7475432 |
ttcaatggtgttttctgtctcaaaggtttgtgt |
7475400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
191 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||| |
|
|
| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 8139028 - 8139134
Alignment:
| Q |
11 |
attattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgttt-atatatggcactatctgttaatacatggctggctttagaa |
109 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| | ||||||||||| || |||| ||||||| ||||||||||||||| |||| ||| |
|
|
| T |
8139028 |
attattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgttttatgtatg-cactatcagttaatacatggctgactttggaa |
8139119 |
T |
|
| Q |
110 |
tgatgtctcagtttt |
124 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
8139120 |
ttatgtctcagtttt |
8139134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
111 |
gatgtctcagttttttatgtttcttgatcat |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University