View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_32 (Length: 311)
Name: NF1523_high_32
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 37861999 - 37861718
Alignment:
| Q |
14 |
agaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaactaaatatggaacagttgaaacatttgaagagttaacatgttcatttaga |
113 |
Q |
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| T |
37861999 |
agaagaaaaaagagtgaagcaacataagagaactttagttgaattttgaactaaatatggaacagttgaaacatttgaagagttaacatgtttatttaga |
37861900 |
T |
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| Q |
114 |
aactatggtcactacaaaagtccaagaatactcaa-tgtggaaattctgtatcgatgaatgcacaaatgtggcgatttttaccattaatcgctacagcat |
212 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37861899 |
aactatggtcactaaaaaagtccaagaatactcaaatgtggaaattctgtatcgatgaatgcacaaatgtggtgatttttaccattaatcgctacagcat |
37861800 |
T |
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| Q |
213 |
tgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctagagcacaaggaaatatttatgacttgttcc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861799 |
tgtagaaaaacattaatgcttgtgagagatttacaaaataatggatgtcctagagcacaaggaaatatttatgacttgttcc |
37861718 |
T |
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