View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_high_39 (Length: 285)
Name: NF1523_high_39
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 41707483 - 41707748
Alignment:
| Q |
6 |
actgataagaaactattaactataattatgataa-taaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaagagac |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41707483 |
actgataagaaactattaactataattatgataaataaaagtaaaattgcatagtgtattagaaaattacaccataaattaaaggaaggaataaaaagac |
41707582 |
T |
|
| Q |
105 |
aaataaatgagagggatgatgatggaattacaatgaatgttggaagg-aggacgcgaaggagaccaaaatgcgaagaacagaagaaaaatgaagtatgag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41707583 |
aaataaatgagagggatgatgatggaattacaatgaatgttggaaggaaggacggggaggagaccaaaatgcgaagaacagaagaaaaatgaagtatgag |
41707682 |
T |
|
| Q |
204 |
gaaggaataggaagtttaacac--agatttaaattttaaatgagggaaagcatggaaatgtgaggt |
267 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41707683 |
gaaggaataggaagtttaacacaaagatttaaattttaaatgagggaaagcatggaaatgtgaggt |
41707748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 41717371 - 41717422
Alignment:
| Q |
6 |
actgataagaaactattaactataattatgataataaaagtaaaattgcata |
57 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41717371 |
actgataagaaattattaactataattatgataataaatgtaaaattgcata |
41717422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University