View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_43 (Length: 268)
Name: NF1523_high_43
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 51 - 256
Target Start/End: Complemental strand, 8896887 - 8896682
Alignment:
| Q |
51 |
ctcatcgctccagtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtactacgactagtggtatagct |
150 |
Q |
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| T |
8896887 |
ctcatcgctctcgtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtactatgactagtggtatagct |
8896788 |
T |
|
| Q |
151 |
tctttagaaatttgctgtagatgtgtatccttgattcgattagtttgggaactcctatatcatgtctgactacagatctcaatgctctgatttgttgcac |
250 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8896787 |
tctttagaaatttgctgtagatgtgtatctatgattcaattagtttggaaactcctatatcatgtctgactacagatctcaatgctctgatttgttgcac |
8896688 |
T |
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| Q |
251 |
aggttc |
256 |
Q |
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|||||| |
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| T |
8896687 |
aggttc |
8896682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 49085267 - 49085348
Alignment:
| Q |
51 |
ctcatcgctccagtcaaagagaagcagctctaacaaagtttcgattaaagcgaaaagagagatgcttcgagaaaaaggtact |
132 |
Q |
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|||||||| | || |||||||||||||||||||||||||||||| | ||||||||||| ||||||| || ||||||||||| |
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| T |
49085267 |
ctcatcgcactagccaaagagaagcagctctaacaaagtttcgactgaagcgaaaagacagatgctatgacaaaaaggtact |
49085348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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