View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_44 (Length: 267)
Name: NF1523_high_44
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4996457 - 4996722
Alignment:
| Q |
1 |
tcacttatggtttctcatgcaaaattcttattgctttcaagtattcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccact |
100 |
Q |
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| T |
4996457 |
tcacttatggtttctcatgcaaaattcttattgatttcaagtaatcactttttcaacttttcaaaagaatccaaatcttaatcacgtttccccctccact |
4996556 |
T |
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| Q |
101 |
ttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatcccnnnnnnnncaagaccttttttgttactatcttcaagttcaac |
200 |
Q |
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| T |
4996557 |
ttcaaacctttttccaaccgttcatcattgattgcacacttttctccataataatccc-aaaaaatcaagaccttttttgttactatcttcaagttcaac |
4996655 |
T |
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| Q |
201 |
aactaaagtgaatcttgtgaactgtctctatcttcatgcatggataagaggagcttctacttattca |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4996656 |
aactaaagtgaatcttgtgaactgtctctatcttcatgcatgaataagaggagcttctacttattca |
4996722 |
T |
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