View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_45 (Length: 267)
Name: NF1523_high_45
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_45 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 17746280 - 17746537
Alignment:
| Q |
10 |
aagaaaatctaagactcaaaatatttatagatgttcttatatattatctatcaacgtagtatttatattgacattagattcaaatccaagtcatattaaa |
109 |
Q |
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| T |
17746280 |
aagaaaatctaagactcaaaatatttatagatgttcttatatattatctatcaacgtagtatttatattgacattagattcaaatccaagtcatattaaa |
17746379 |
T |
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| Q |
110 |
atatgagttgaattctaactaaatctaaatcataccaactgaatcaacttttgttgaccgtaaaaacttcttttggttttgactaataacagtttataat |
209 |
Q |
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| T |
17746380 |
atatgagttgaattctaaccgaatctaaatcatactaactgaatcaacttttgttgaccgcaaaaacttcttttggttttgtctaataacagtttataat |
17746479 |
T |
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| Q |
210 |
attaaacgtttgtctaattacatatttaatagacaaagattagctgcttattatatta |
267 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
17746480 |
attaaacgtttgtctaatcacatatttaatagacaaagattaggtgcttattatatta |
17746537 |
T |
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