View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_high_6 (Length: 466)

Name: NF1523_high_6
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_high_6
NF1523_high_6
[»] chr2 (7 HSPs)
chr2 (263-449)||(35356955-35357147)
chr2 (1-185)||(35356673-35356857)
chr2 (267-378)||(35341241-35341357)
chr2 (312-425)||(35351767-35351884)
chr2 (312-445)||(35346602-35346735)
chr2 (53-119)||(31150514-31150580)
chr2 (52-94)||(35354782-35354824)
[»] chr3 (3 HSPs)
chr3 (56-119)||(7816422-7816485)
chr3 (56-111)||(5747045-5747100)
chr3 (56-111)||(5784004-5784059)
[»] chr1 (1 HSPs)
chr1 (59-112)||(3117282-3117335)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 263 - 449
Target Start/End: Original strand, 35356955 - 35357147
Alignment:
Q  263 aatattgtcatttaatgatattctttggaagccaatgacgcggcgaccaaataattttgcttggatcatatttaattttgggatattataactttttaaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35356955 aatattgtcatttaatgatattctttggaagccaatgacgcggcaaccaaataattttgcttcgatcatatttaattttgggatattataactttttaaa 35357054  T
Q  363 agacaatacattcaa------ggggtaaaaactctctaacttttctatcaagagtggagttcggaggataatccgcatttggatcaaattatt 449  Q
    |||| || || ||||      ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  35357055 agactatgcactcaactcaagggggtaaaaactctcaaacttttctatcaagagtagagttctgaggataatccgcatttggaccaaattatt 35357147  T

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Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 35356673 - 35356857
Alignment:
Q  1 acgaattaaagaaattggcaaatacacaattataggtgatccgtnnnnnnntacatctcttaaaaacaaaggaatttcctcatccattgaatttacccaa 100  Q
    |||| |||||||||||||||| ||||||||||||||||||||||       ||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  35356673 acgagttaaagaaattggcaattacacaattataggtgatccgtaaaacaatacgtctcttaaaaacaaaggaatttcttcattcattgaatttacccaa 35356772  T
Q  101 accataacatcctcagtcgaaaatgcaacactcctaatgctccaaaatagaaacataaaaagtggaacgacaagttgattgattc 185  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  35356773 accataacatcctcagtcgaaaatgcaacacccttaatgctccaaaatagaaacatataaagtgaaacgacaagttgattgattc 35356857  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 378
Target Start/End: Original strand, 35341241 - 35341357
Alignment:
Q  267 ttgtcatttaatgatattctttggaagccaatgacgcggcgacca----aataattttgcttggatcatatttaatttt-gggatattataactttttaa 361  Q
    ||||||||| ||||||||||||| |||||||||||||||| || |    ||||||||||||||||||||||| |||||| |||||||||||| || |||     
T  35341241 ttgtcatttgatgatattctttgcaagccaatgacgcggctacgagagtaataattttgcttggatcatattgaattttggggatattataaattcttat 35341340  T
Q  362 aagacaatacattcaag 378  Q
    || || ||||| |||||    
T  35341341 aacactatacactcaag 35341357  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 425
Target Start/End: Original strand, 35351767 - 35351884
Alignment:
Q  312 aataattttgcttggatcatatttaattttgg--gatattataactttttaaaagacaatac--attcaaggggtaaaaactctctaacttttctatcaa 407  Q
    |||||||||||||||||||||||| ||||| |  ||||||||| |||||||||| || ||||  |||||||||  |||||||||| ||||| |   ||||    
T  35351767 aataattttgcttggatcatattttatttttgtagatattatatctttttaaaacactatacatattcaagggacaaaaactctcaaacttctgggtcaa 35351866  T
Q  408 gagtggagttcggaggat 425  Q
    ||||||||||||||||||    
T  35351867 gagtggagttcggaggat 35351884  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 445
Target Start/End: Original strand, 35346602 - 35346735
Alignment:
Q  312 aataattttgcttggatcatatttaattttgg-gatattataactttttaaaagacaatacattcaaggggtaaaaactctctaacttttctatcaagag 410  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||  | ||| || |||||  ||||||| ||| |||||| |||| ||   | |||||    
T  35346602 aataattttgcttggatcatatttaattttggtgatattacaacttgat-aaacactatacacccaaggggcaaagactctcaaactattgggttaagag 35346700  T
Q  411 tggagttcggaggataatccgcatttggatcaaat 445  Q
     |||||||||||||| ||||||||||||| |||||    
T  35346701 cggagttcggaggattatccgcatttggaccaaat 35346735  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 31150580 - 31150514
Alignment:
Q  53 acatctcttaaaaacaaaggaatttcctcatccattgaatttacccaaaccataacatcctcagtcg 119  Q
    |||||||||||||||||||||||||| |||||    |||||| | ||||||||||||||||| ||||    
T  31150580 acatctcttaaaaacaaaggaatttcttcatctgaagaattttctcaaaccataacatcctcggtcg 31150514  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 35354824 - 35354782
Alignment:
Q  52 tacatctcttaaaaacaaaggaatttcctcatccattgaattt 94  Q
    |||||||||||||||||||||||||| ||||||  ||||||||    
T  35354824 tacatctcttaaaaacaaaggaattttctcatctgttgaattt 35354782  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 7816422 - 7816485
Alignment:
Q  56 tctcttaaaaacaaaggaatttcctcatccattgaatttacccaaaccataacatcctcagtcg 119  Q
    |||||||||||||||||||||||||||||| | |||||| ||||||||| | ||||||||||||    
T  7816422 tctcttaaaaacaaaggaatttcctcatccgtcgaattttcccaaaccaaaccatcctcagtcg 7816485  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5747045 - 5747100
Alignment:
Q  56 tctcttaaaaacaaaggaatttcctcatccattgaatttacccaaaccataacatc 111  Q
    ||||||||||||||| |||||| ||||||| | ||||||  |||||||||||||||    
T  5747045 tctcttaaaaacaaatgaattttctcatccgtcgaatttttccaaaccataacatc 5747100  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5784004 - 5784059
Alignment:
Q  56 tctcttaaaaacaaaggaatttcctcatccattgaatttacccaaaccataacatc 111  Q
    ||||||||||||||| |||||| ||||||| | ||||||  |||||||||||||||    
T  5784004 tctcttaaaaacaaatgaattttctcatccgtcgaatttttccaaaccataacatc 5784059  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 3117335 - 3117282
Alignment:
Q  59 cttaaaaacaaaggaatttcctcatccattgaatttacccaaaccataacatcc 112  Q
    |||||||||||| |||||| ||||||| |  ||||| |||||||||||||||||    
T  3117335 cttaaaaacaaatgaattttctcatccgtcaaattttcccaaaccataacatcc 3117282  T

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