View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_high_9 (Length: 450)
Name: NF1523_high_9
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 15596901 - 15596504
Alignment:
| Q |
18 |
tcttcccatttcaatttcatgttactacacttgctacttcaaacgttatcatgagccttgagaaaaaccttctagatatcacattcattcttttgcctcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
15596901 |
tcttcccatttcaatttcatgttactacacttgctacttcaaacgttaccttgagccttgagaaaagccttctggatatcacattcattcttttgcctcg |
15596802 |
T |
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| Q |
118 |
cacacgactcctttctagctgactgacattccttgtgcttactgagatgaactaccggactaccatactagagatgattctaaactctcttgacttagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| || |
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| T |
15596801 |
cacacgactcctttctagctgactgacattccttgtgcttactgagctgaactactggactaccatactagagacgattctaaactctcttgacttactc |
15596702 |
T |
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| Q |
218 |
aggtagaactacgtctatcatgctcttactacatcttcatcgactacttgagtcttctcatttatgaacttggcgcttaaaaaatttcttactcgtctct |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
15596701 |
aggtagaactacgtctatcatgctcttactgcatcttcatcgactacttgagtcttctcattattgaacttggcgcttcaaaaatttcttactcgtctct |
15596602 |
T |
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| Q |
318 |
taacacttctcactggaaacggctacccgcttgactgaccactacttatcgtatctcatgaaactcatattccaaagtataaggctttgtgtattcta |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15596601 |
taacacttctcactggaaacggctacccgcttgactgaccactacttatcgtatctcatgaaactcatattccaaagtacaaggctttgtgtattcta |
15596504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 194 - 440
Target Start/End: Complemental strand, 15596509 - 15596263
Alignment:
| Q |
194 |
attctaaactctcttgacttagtcaggtagaactacgtctatcatgctcttactacatcttcatcgactacttgagtcttctcatttatgaacttggcgc |
293 |
Q |
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| T |
15596509 |
attctaaactctcttgacttactcaggtagaactacgtctatcatgctcttactgcatcttcatcgactacttgagtcttctcattattgaacttggcgc |
15596410 |
T |
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| Q |
294 |
ttaaaaaatttcttactcgtctcttaacacttctcactggaaacggctacccgcttgactgaccactacttatcgtatctcatgaaactcatattccaaa |
393 |
Q |
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| T |
15596409 |
ttcaaaaatttcttactcgtctcttaacacttctcactggaaacggctaccagcttgactgaccactacttatcgtatctcatgaaactcatattccaaa |
15596310 |
T |
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| Q |
394 |
gtataaggctttgtgtattctattaattccttgccgatcaatctctg |
440 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15596309 |
gtacaaggctttgtgtattctattaattccttgccgatcaatttctg |
15596263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 392
Target Start/End: Complemental strand, 14735154 - 14735044
Alignment:
| Q |
282 |
tgaacttggcgcttaaaaaatttcttactcgtctcttaacacttctcactggaaacggctacccgcttgactgaccactacttatcgtatctcatgaaac |
381 |
Q |
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||||| ||| |||| || |||||||||||| ||||| || |||||||||| |||| ||||| |||||||||| || ||||||||| ||||||||||||| |
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| T |
14735154 |
tgaacctggtgcttcaagaatttcttactcatctctcaatacttctcactagaaatggctaaccgcttgactaacggctacttatcctatctcatgaaac |
14735055 |
T |
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| Q |
382 |
tcatattccaa |
392 |
Q |
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|| |||||||| |
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| T |
14735054 |
tcctattccaa |
14735044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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