View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_low_1 (Length: 769)
Name: NF1523_low_1
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 398 - 751
Target Start/End: Original strand, 3734396 - 3734750
Alignment:
| Q |
398 |
caattaatttcatggtattccaatacatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
497 |
Q |
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| T |
3734396 |
caattaatttcatggtattccaatatatataccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtat |
3734495 |
T |
|
| Q |
498 |
ttcaatcagtgactttgttttgaatgcaactctttccttaacttccttcttccaattctcgtttccactcatattcatattattagtatctcctaaaaca |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3734496 |
ttcaatcagtgactttgttttgaatgcaactctttccttaacttccttcttccaattctcgtttccactcatattcatattattagtatctcctaaaaca |
3734595 |
T |
|
| Q |
598 |
tgacaacagtaacaccaataattagaagctaaagaaaatatacataa-nnnnnnnnaaacgacaaaatttattaataatcaagtctctgcacaagacgac |
696 |
Q |
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| T |
3734596 |
tgacaacagtaacaccaataattagaagctaaagaaaatatacataatttttttttaaacgacaaaatttattaataatcaagtctctgcacaagacgac |
3734695 |
T |
|
| Q |
697 |
cagagaccagtaagataaaaattggcttactgattgaactagaagacccctcaat |
751 |
Q |
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| T |
3734696 |
cagagaccagtaagataaaaattggcttactgattgaactagaagacccctcaat |
3734750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 3734007 - 3734348
Alignment:
| Q |
13 |
aatataaccgaatctagatgaatagtaatgtatagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaggtaaattg |
112 |
Q |
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| T |
3734007 |
aatataaccgaatctagatgaatagta-----tagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaagtaaattg |
3734101 |
T |
|
| Q |
113 |
tacatgagcaattgcaaactcaaacttgttgggaatttgaatattttcatgtaggaatactagtaacattagt-------------aaagaacttcttca |
199 |
Q |
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| T |
3734102 |
tacatgagcaattgcaaactcaaacttgttgggaatttgaatattttcatgtaggaatactagtaacattagtaagagcatgcagcaaagaacttcttca |
3734201 |
T |
|
| Q |
200 |
tattatgtttgagctagcaagaatttggatgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcnnnnnnn |
299 |
Q |
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| T |
3734202 |
tattatgtttgagctagcaagaatttggatgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcttttttt |
3734301 |
T |
|
| Q |
300 |
nacaggacacccctccactgaacacctataataattcctgcaatcac |
346 |
Q |
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| T |
3734302 |
tacaggacacccctccactgaacacctataataattcctgcaatcac |
3734348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 709
Target Start/End: Original strand, 42272445 - 42272494
Alignment:
| Q |
660 |
aaaatttattaataatcaagtctctgcacaagacgaccagagaccagtaa |
709 |
Q |
| |
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|||||||||||||||| |||| ||||||| |||||| |||||||| |||| |
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| T |
42272445 |
aaaatttattaataattaagtttctgcactagacgaacagagacctgtaa |
42272494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 528
Target Start/End: Original strand, 48289018 - 48289119
Alignment:
| Q |
427 |
taccttggattagggctattcttaaccattttctttccatacttcctccatctgtacccatcatcaagtatttcaatcagtgactttgttttgaatgcaa |
526 |
Q |
| |
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||||||||||| ||||| || || ||||| |||||||| ||||||||||||||| |||||||||| || ||||||| | |||||| ||||||||||||| |
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| T |
48289018 |
taccttggattggggctgtttttcaccatcttctttccgtacttcctccatctgaacccatcatccagaatttcaacctctgacttggttttgaatgcaa |
48289117 |
T |
|
| Q |
527 |
ct |
528 |
Q |
| |
|
|| |
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|
| T |
48289118 |
ct |
48289119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 658 - 717
Target Start/End: Original strand, 40999781 - 40999840
Alignment:
| Q |
658 |
acaaaatttattaataatcaagtctctgcacaagacgaccagagaccagtaagataaaaa |
717 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||| || ||||||||||||||||| |
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| T |
40999781 |
acaaaatttattaattaccaaatctctgcacaagacgaacatggaccagtaagataaaaa |
40999840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 693
Target Start/End: Complemental strand, 49282552 - 49282513
Alignment:
| Q |
654 |
aacgacaaaatttattaataatcaagtctctgcacaagac |
693 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
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| T |
49282552 |
aacggcaaaatttattaataaacaagtctctgcacaagac |
49282513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 692
Target Start/End: Complemental strand, 23144656 - 23144622
Alignment:
| Q |
658 |
acaaaatttattaataatcaagtctctgcacaaga |
692 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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| T |
23144656 |
acaaaatttattaataatcaagtctctgcgcaaga |
23144622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 704
Target Start/End: Complemental strand, 16863251 - 16863206
Alignment:
| Q |
659 |
caaaatttattaataatcaagtctctgcacaagacgaccagagacc |
704 |
Q |
| |
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|||||||||||||| | ||||||||||||||||| || |||||||| |
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|
| T |
16863251 |
caaaatttattaatcaccaagtctctgcacaagaagagcagagacc |
16863206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 661 - 694
Target Start/End: Original strand, 14752230 - 14752263
Alignment:
| Q |
661 |
aaatttattaataatcaagtctctgcacaagacg |
694 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
14752230 |
aaatttattaataatcaagtccctgcacaagacg |
14752263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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