View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_12 (Length: 429)

Name: NF1523_low_12
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_12
NF1523_low_12
[»] chr2 (12 HSPs)
chr2 (10-429)||(15001307-15001737)
chr2 (167-429)||(10415026-10415288)
chr2 (208-421)||(39155455-39155669)
chr2 (13-157)||(44323534-44323680)
chr2 (200-362)||(9312110-9312272)
chr2 (13-74)||(10415387-10415448)
chr2 (13-157)||(809261-809408)
chr2 (13-73)||(39155250-39155310)
chr2 (13-74)||(9311894-9311954)
chr2 (13-73)||(4696167-4696227)
chr2 (263-301)||(4405203-4405241)
chr2 (13-54)||(45331561-45331602)
[»] chr1 (9 HSPs)
chr1 (13-429)||(17653986-17654403)
chr1 (13-93)||(14649796-14649876)
chr1 (13-93)||(14659586-14659666)
chr1 (13-145)||(16100212-16100346)
chr1 (13-74)||(29289619-29289680)
chr1 (288-429)||(29289911-29290052)
chr1 (334-421)||(16099917-16100005)
chr1 (13-58)||(10991766-10991811)
chr1 (13-62)||(17479350-17479399)
[»] chr6 (10 HSPs)
chr6 (167-429)||(9821815-9822077)
chr6 (167-429)||(25479033-25479295)
chr6 (167-429)||(33062185-33062446)
chr6 (13-157)||(22013426-22013572)
chr6 (13-145)||(9814280-9814415)
chr6 (13-93)||(27526762-27526842)
chr6 (15-145)||(9822120-9822253)
chr6 (13-74)||(25478855-25478916)
chr6 (13-145)||(33062489-33062624)
chr6 (13-145)||(27650511-27650649)
[»] chr4 (10 HSPs)
chr4 (13-429)||(4764087-4764521)
chr4 (13-429)||(18694757-18695197)
chr4 (167-362)||(27734482-27734676)
chr4 (208-421)||(27561954-27562168)
chr4 (13-62)||(11513350-11513399)
chr4 (13-73)||(27561749-27561809)
chr4 (13-93)||(51533186-51533265)
chr4 (13-93)||(54352429-54352509)
chr4 (17-74)||(5359203-5359260)
chr4 (334-421)||(54352747-54352835)
[»] chr3 (6 HSPs)
chr3 (13-429)||(6911924-6912364)
chr3 (13-145)||(5706129-5706263)
chr3 (13-157)||(28103271-28103417)
chr3 (13-145)||(28059043-28059177)
chr3 (13-145)||(28069468-28069602)
chr3 (334-421)||(5706477-5706565)
[»] scaffold0406 (2 HSPs)
scaffold0406 (200-429)||(2810-3039)
scaffold0406 (13-74)||(3195-3256)
[»] chr8 (7 HSPs)
chr8 (306-428)||(4707397-4707519)
chr8 (167-421)||(26918064-26918320)
chr8 (13-157)||(18981876-18982022)
chr8 (13-74)||(15924478-15924539)
chr8 (13-145)||(4707242-4707377)
chr8 (13-157)||(26917880-26918027)
chr8 (13-145)||(26341069-26341204)
[»] chr7 (3 HSPs)
chr7 (13-429)||(28802736-28803162)
chr7 (13-145)||(36264980-36265114)
chr7 (13-60)||(22010790-22010837)
[»] scaffold0713 (4 HSPs)
scaffold0713 (336-429)||(124-217)
scaffold0713 (336-429)||(4260-4353)
scaffold0713 (13-145)||(255-390)
scaffold0713 (24-145)||(4391-4515)
[»] chr5 (5 HSPs)
chr5 (208-429)||(15597793-15598014)
chr5 (13-145)||(5520064-5520198)
chr5 (13-157)||(42784945-42785091)
chr5 (36-145)||(32745046-32745157)
chr5 (167-220)||(27199095-27199149)
[»] scaffold0002 (1 HSPs)
scaffold0002 (208-348)||(10152-10292)
[»] scaffold0438 (2 HSPs)
scaffold0438 (13-145)||(8249-8384)
scaffold0438 (13-145)||(11230-11365)
[»] scaffold0654 (2 HSPs)
scaffold0654 (42-145)||(4308-4414)
scaffold0654 (42-145)||(5662-5768)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 429
Target Start/End: Original strand, 15001307 - 15001737
Alignment:
Q  10 attatactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat--caaaacataaccaa 107  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||    
T  15001307 attatgctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatatttcaccacataaccaa 15001406  T
Q  108 atttatatcaaaatatgttcatcaaaactaaattgaaaggctactactta---------gtaaatttgaatccaaatcgcgtacatgtcaatatcgaatc 198  Q
    | ||||||||||||| ||||||||||||||||||||||| ||||||||||         ||||||| ||||||||||||||||||||| ||||| |||||    
T  15001407 acttatatcaaaatacgttcatcaaaactaaattgaaagtctactacttatcatcataagtaaattcgaatccaaatcgcgtacatgttaatattgaatc 15001506  T
Q  199 ttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttat 298  Q
     ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15001507 ctttcaaagacgcatatttcaaaaccacgtttcacaatatatcaaaactactatgaaaatacgtacaatcaaattttccatttcaatccctctactttat 15001606  T
Q  299 aaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacac 398  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  15001607 aaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcccatatctccataacac 15001706  T
Q  399 atgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||||||| |||||||| ||||||||||    
T  15001707 atgtcataatacatgcaaccgaatctcaatt 15001737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 167 - 429
Target Start/End: Complemental strand, 10415288 - 10415026
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaagacgcatatttcaaaacc-acatttcaaaacatatcaaaactactatgaaaatacgtaca 265  Q
    ||||||||||| |||||  | |||||| || |||| |||| ||||||||||||||||| || ||||| || || |||| || |||| |||||||| ||||    
T  10415288 aatccaaatcgtgtacaaattaatatcaaacctttccaaa-acgcatatttcaaaacccacgtttcacaagatctcaatacaactacgaaaatacataca 10415190  T
Q  266 atcaaattctccatttcaatccctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatt 365  Q
    |||||||||||| ||| |||  |||||||||| ||| | ||||||||||||||||| |||| || ||||||||||||||||||  | |||| |||||||     
T  10415189 atcaaattctccgttttaatttctctactttacaaatcacaagtaaaatccaaatcgaaatggatcgcatattaatatcgaaa-atcccaagaacatata 10415091  T
Q  366 tttc-aaaccgtatttcct-atatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    | || |||||||||||| | || ||| |||||| ||| ||||| |||| ||||||||| |||||||    
T  10415090 tctcaaaaccgtatttcttcatttct-caaaactcatatcatagtataggcaaccaaacctcaatt 10415026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 39155455 - 39155669
Alignment:
Q  208 acgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataaagcgcaa 307  Q
    ||||||||||||| ||||| ||||| ||||||||||||| | || |||||||| || |||| ||| |||| |||||||  || ||||||||||| | |||    
T  39155455 acgcatatttcaacaccacgtttcacaacatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataaatcacaa 39155554  T
Q  308 gtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttc-ctatatctccaaaacacatgtcat 405  Q
    |||||||||||||||||||  |||||||||||| ||||||  ||  ||| ||||| | | || |||||||||||| | |||||| |||||| | ||||||    
T  39155555 gtaaaatccaaatccaaatgaagcgcatattaacatcgaatattctcaagaacatgtatctcaaaaccgtatttctccatatct-caaaacccgtgtcat 39155653  T
Q  406 aatatatgcaaccaaa 421  Q
    | ||||||||||||||    
T  39155654 agtatatgcaaccaaa 39155669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 44323680 - 44323534
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||| || ||||| ||||  ||| |||||||  |||||    
T  44323680 atactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataatgaaatt 44323581  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||| ||| ||||||||||||  ||| ||||| ||||||||||    
T  44323580 tatgtcaatataggttcatcaaaacacaatcgaaagtctactactta 44323534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 9312110 - 9312272
Alignment:
Q  200 tttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttata 299  Q
    ||||||| | |||||||| |||| ||  ||||| ||||||||||||| |||| |||||||| |||||||||||||||  |||| ||  ||||||||| ||    
T  9312110 tttcaaaaatgcatattttaaaatcatgtttcacaacatatcaaaacaactacgaaaatacatacaatcaaattctctgtttccatttctctactttgta 9312209  T
Q  300 aagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacat 362  Q
    || | ||||||||||||||| ||||||  |||||||||| |||| |||| ||||||| |||||    
T  9312210 aatcccaagtaaaatccaaacccaaatgaagcgcatatttatatagaaaatttccaagaacat 9312272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 10415448 - 10415387
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  10415448 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 10415387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 809261 - 809408
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||  ||||  ||  |||||||| ||| |    
T  809261 atactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaatccatatttcggaacataacgaaact 809360  T
Q  111 tatatcaaaatatg-ttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||| ||| | |||||||||||| ||| ||||  ||||||||||    
T  809361 tatgtcaatatacgattcatcaaaactcaatcgaaaatctactactta 809408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 39155250 - 39155310
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaa 73  Q
    |||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||    
T  39155250 atactaggtgcacctaggtcgacgccattataaccgtaattttcaaaacatcattcttaaa 39155310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 9311894 - 9311954
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||    
T  9311894 atactaggtgcacctaggtcgtcatcattataaccgtaattttcaaaa-accattcttaaaa 9311954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 4696227 - 4696167
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaa 73  Q
    |||||||||| ||||| | | ||| |||||||||| |||||||||||||||||||||||||    
T  4696227 atactaggtgcacctaagccgtcgccattataaccataattttcaaaacatcattcttaaa 4696167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 301
Target Start/End: Complemental strand, 4405241 - 4405203
Alignment:
Q  263 acaatcaaattctccatttcaatccctctactttataaa 301  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4405241 acaatcaaattctccatttcaattcctctactttataaa 4405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 45331602 - 45331561
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattt 54  Q
    |||||||||| ||||||||| ||||| |||||||||||||||    
T  45331602 atactaggtgcacctaggtcgtcgtctttataaccgtaattt 45331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 17653986 - 17654403
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat--caaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| |||||  || |||||||| ||| |    
T  17653986 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 17654085  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactacttagtaa----atttgaatccaaatcgcgtacatgtcaatatcgaatcttttcaa 205  Q
    ||| |||||||| || ||||||||||| ||| ||||  | |||||||| |||    |  | ||||||||||     ||  | ||||||||||| ||||||    
T  17654086 tatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta-taatcataagtaaatccaaatc-----caaattaatatcgaatcctttcaa 17654179  T
Q  206 agacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataaagcgc 305  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||    
T  17654180 agacgcatatttcaaaaccacgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctttactttataaatcgc 17654279  T
Q  306 aagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacacatgtcat 405  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17654280 cagtaaaatccaaatccaaatagagcacatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcccatatctccaaaacacatgtcat 17654379  T
Q  406 aatatatgcaaccaaatctcaatt 429  Q
    ||||||||||||||||||||||||    
T  17654380 aatatatgcaaccaaatctcaatt 17654403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 14649876 - 14649796
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat 93  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |||||    
T  14649876 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatat 14649796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 14659666 - 14659586
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat 93  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |||||    
T  14659666 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatat 14659586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 16100346 - 16100212
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||||||| ||| || ||||| ||||  |   |||||||| ||| |    
T  16100346 atactaggtgcacctaggtcgtcgtcattatagccgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatattttgcaacataacgaaact 16100247  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    |||||||| |||  |||||||||||| ||| ||||    
T  16100246 tatatcaacatacattcatcaaaactcaatcgaaa 16100212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 29289619 - 29289680
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  29289619 atactaggtgcacctaggtcgtcgtcattgtaaccgtaattttcaaaacaccattcttaaaa 29289680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 29289911 - 29290052
Alignment:
Q  288 ctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttcct-at 385  Q
    |||||||||||||| | ||||||||||||||||| |||| || | ||||||||||||||||  | |||| |||| || | || |||||||||||| | ||    
T  29289911 ctctactttataaatcacaagtaaaatccaaatcaaaatggatcacatattaatatcgaaa-atcccaagaacacatatctcaaaaccgtatttcttcat 29290009  T
Q  386 atctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
     ||| |||||| ||||||||| |||| ||||||||| |||||||    
T  29290010 ttct-caaaactcatgtcatagtataagcaaccaaacctcaatt 29290052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 16100005 - 16099917
Alignment:
Q  334 atattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttc-ctatatctccaaaacacatgtcataatatatgcaaccaaa 421  Q
    ||||||||||||||| || |||||||||||| | || |||||||||||| | |||||| |||||| ||||||||| ||||||||| ||||    
T  16100005 atattaatatcgaaaattcccaaaaacatatatctcaaaaccgtatttctccatatct-caaaactcatgtcatagtatatgcaatcaaa 16099917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10991766 - 10991811
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaa 58  Q
    |||||||||| || |||||| ||||||||||| |||||||||||||    
T  10991766 atactaggtgcacttaggtcgtcgtcattatacccgtaattttcaa 10991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 17479350 - 17479399
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaaca 62  Q
    |||||||||| ||||||||| |||||| || |||| ||||||||||||||    
T  17479350 atactaggtgcacctaggtcgtcgtcactaaaaccataattttcaaaaca 17479399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 167 - 429
Target Start/End: Complemental strand, 9822077 - 9821815
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaa 266  Q
    |||||||||||||||||  | ||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  9822077 aatccaaatcgcgtacaaattaatattgaatcctttcaaagacgcatatttcaaaaccacgtttcacaacatatcaaaactactatgaaaatacatacaa 9821978  T
Q  267 tcaaattctccatttcaatccctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatattt 366  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9821977 tcaaattctccatttcaatccctctactttataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagttttcaaaaacatattt 9821878  T
Q  367 ttcaaaccgtatttcctatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9821877 ttcaaaccgtatttcccatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 9821815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 167 - 429
Target Start/End: Original strand, 25479033 - 25479295
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaa 266  Q
    |||||||||||||||||  | |||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  25479033 aatccaaatcgcgtacaaattaatatcaaatcctttcaaagacgcatatttcaaaaccacgtttcacaacatatcaaaactactatgaaaatacatacaa 25479132  T
Q  267 tcaaattctccatttcaatccctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatattt 366  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  25479133 tcaaattctccatttcaatccctctactttataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaagcatatgt 25479232  T
Q  367 ttcaaaccgtatttcctatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  25479233 ttcagaccgtatttcccatatatccaaaacacatgtcataatatatgcaaccaaatctcaatt 25479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 167 - 429
Target Start/End: Complemental strand, 33062446 - 33062185
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaa 266  Q
    |||||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||    
T  33062446 aatccaaatcgcgtacaaattaatatcgaatcctttcaaagacgcatatttcaaaaccacgtatcacaacatatcaaaactactatgaaaatacatacaa 33062347  T
Q  267 tcaaattctccatttcaatccctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatattt 366  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33062346 tcaaattctccatttcaatccctctactttataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacata-tt 33062248  T
Q  367 ttcaaaccgtatttcctatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  33062247 ttcaaaccgtatttcccatatctccaacacacatgtcataatatatgcaactaaatctcaatt 33062185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 22013572 - 22013426
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||| || ||||| ||||  ||| |||||||  |||||    
T  22013572 atactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataatgaaatt 22013473  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||| ||| ||||||||||||  ||| ||||| ||||||||||    
T  22013472 tatgtcaatataggttcatcaaaacacaatcgaaagtctactactta 22013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 9814415 - 9814280
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |    
T  9814415 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 9814316  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| |||||||| || ||||||||||| ||| ||||    
T  9814315 tatttcaaaatacgtatcatcaaaactcaatcgaaa 9814280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 27526842 - 27526762
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat 93  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |||||    
T  27526842 atactaggtgcatctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatat 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 9822253 - 9822120
Alignment:
Q  15 actaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaattta 112  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |||    
T  9822253 actaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaactta 9822154  T
Q  113 tatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    | |||||||| || ||||||||||| ||| ||||    
T  9822153 tttcaaaatacgtatcatcaaaactcaatcgaaa 9822120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 25478855 - 25478916
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  25478855 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 25478916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 33062624 - 33062489
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| | ||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |    
T  33062624 atactaggtgcaactaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 33062525  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| ||||| ||||| ||||||||||| ||| ||||    
T  33062524 tatttcaaagtatgtatcatcaaaactcaatcgaaa 33062489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 27650649 - 27650511
Alignment:
Q  13 atactaggtggacctaggtcatcgtcatta----taaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataacca 106  Q
    |||||||||| ||||||||| |||||||||    |||||||||||||||||||  || |||||||  ||| || ||||| ||||  ||  || ||||| |    
T  27650649 atactaggtgcacctaggtcgtcgtcattaattataaccgtaattttcaaaaccccaatcttaaagcacatgtctaaaaccatatttcgcaaaataacga 27650550  T
Q  107 aatttatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    || |||||||||||||  ||||||| |||| ||| ||||    
T  27650549 aacttatatcaaaatactttcatcagaactcaatcgaaa 27650511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 4764087 - 4764521
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat--caaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||| | |||||  || |||||||| ||| |    
T  4764087 atactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaagaccatatttcacaacataacaaaact 4764186  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactactta---------gtaaat------ttgaatccaaatcgcgtacatgtcaatatcg 194  Q
    ||| |||||||| || ||||||||||| ||| ||||  ||||||||||         ||||||      |  |||||||||||||||||  | ||||||     
T  4764187 tatttcaaaatacgtatcatcaaaactcaatcgaaaatctactacttataatcataagtaaatccaaattcaaatccaaatcgcgtacaaattaatatca 4764286  T
Q  195 aatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctact 294  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  4764287 aatcctttcaaagacgcatatttcaaaaccacgtttcacaacatatcaaaactactgtgaaaatacatacaatcaaattctccatttcaatccctctact 4764386  T
Q  295 ttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaa 394  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4764387 ttataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatatttcaaaccgtatttcccatatctccaaa 4764486  T
Q  395 acacatgtcataatatatgcaaccaaatctcaatt 429  Q
    |||||||||| |||||||||| |||||||||||||    
T  4764487 acacatgtcaaaatatatgcatccaaatctcaatt 4764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 18694757 - 18695197
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |    
T  18694757 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 18694856  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactactt---------agtaaat-----ttgaa-------tccaaatcgcgtacatgtca 188  Q
    ||| |||||||| || ||||||||||| ||| ||||  |||||||||         |||||||     || ||       |||||||||||||||  | |    
T  18694857 tatttcaaaatacgtatcatcaaaactcaatcgaaaatctactacttataatcataagtaaatccaaattcaaatccaaatccaaatcgcgtacaaatta 18694956  T
Q  189 atatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccc 288  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18694957 atatcaaatcctttcaaagacgcatatttcaaaaccacgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccc 18695056  T
Q  289 tctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatc 388  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||    
T  18695057 tctactttataaatcgcaagtaaaatccaaatccaaatagagtgcatattaatatcgaaagtttccaaaaacatacatttcaaaccgtatttctcatatc 18695156  T
Q  389 tccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  18695157 tccaaaacacatgtcataatatatgcagccaaatctcaatt 18695197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 362
Target Start/End: Original strand, 27734482 - 27734676
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaa 266  Q
    |||||||||| ||||||  | |||||| || |||| |||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||    
T  27734482 aatccaaatcacgtacaaattaatatcaaaccttt-caaaaacgcatatttcaaaaccacgtttcacaacatatcaaaacaactatgaaaatacatacaa 27734580  T
Q  267 tcaaattctccatttcaatccctctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacat 362  Q
    ||||||| ||| |||||||  ||| | ||||||||   |||||||||||||||| |||||  || ||||||||||||| ||| || ||||||||||    
T  27734581 tcaaattatccgtttcaatttctcaaatttataaattacaagtaaaatccaaattcaaatgaagtgcatattaatatcaaaaattcccaaaaacat 27734676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 27561954 - 27562168
Alignment:
Q  208 acgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataaagcgcaa 307  Q
    ||||||||||||| ||||| ||||| ||||||||||||| | || |||||||| || |||| ||| |||| |||||||  || ||||||||||| | |||    
T  27561954 acgcatatttcaacaccacgtttcacaacatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataaatcacaa 27562053  T
Q  308 gtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttc-ctatatctccaaaacacatgtcat 405  Q
    |||||||||||||||||||  |||||||||||| || |||  ||  ||| ||||| | | || |||||||||||| | |||||| |||||| ||||||||    
T  27562054 gtaaaatccaaatccaaatgaagcgcatattaacattgaatattctcaagaacatgtatctcaaaaccgtatttctccatatct-caaaacccatgtcat 27562152  T
Q  406 aatatatgcaaccaaa 421  Q
    | ||||||||||||||    
T  27562153 agtatatgcaaccaaa 27562168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11513350 - 11513399
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaaca 62  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  11513350 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 11513399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 27561749 - 27561809
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaa 73  Q
    |||||||||| |||||||||  |  ||||||||||||||||||||||||||||||||||||    
T  27561749 atactaggtgcacctaggtcgacaccattataaccgtaattttcaaaacatcattcttaaa 27561809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 51533265 - 51533186
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat 93  Q
    |||||||||| ||||||||| |||| |||||||||||||||||| |||| |||||||||||| ||| || ||||| |||||    
T  51533265 atactaggtgcacctaggtcgtcgttattataaccgtaattttc-aaacctcattcttaaaacacatgtctaaaaccatat 51533186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 54352429 - 54352509
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat 93  Q
    |||||| ||| ||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||| || ||||| |||||    
T  54352429 atactatgtgcacctaggtcgttgtcattataaccgtaattttcaaaaccccattcttaaaacacatgtctaaaaccatat 54352509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 5359203 - 5359260
Alignment:
Q  17 taggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||| || || ||| ||||||||||||||||||||||||||||| ||| |||||||    
T  5359203 taggtgcacgtatgtcgtcgtcattataaccgtaattttcaaaacaccatacttaaaa 5359260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 54352747 - 54352835
Alignment:
Q  334 atattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttc-ctatatctccaaaacacatgtcataatatatgcaaccaaa 421  Q
    ||||||||||||||| || |||||||||||| | || ||| |||||||| | |||||| |||||| ||||||||| ||||||||| ||||    
T  54352747 atattaatatcgaaaattcccaaaaacatatatctcaaaatcgtatttctccatatct-caaaactcatgtcatagtatatgcaatcaaa 54352835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 6911924 - 6912364
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||| | ||||  ||| |||||||| ||| |    
T  6911924 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaagaccatatttcacaacataacaaaact 6912023  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactactt---------agtaaat-----ttgaa-------tccaaatcgcgtacatgtca 188  Q
    ||| |||||||| || ||||||||||| ||||||||  |||||||||         |||||||     || ||       |||||||||||||||  | |    
T  6912024 tatttcaaaatacgtatcatcaaaactcaattgaaaatctactacttataatcataagtaaatccaaattcaaatccaaatccaaatcgcgtacaaatta 6912123  T
Q  189 atatcgaatcttttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccc 288  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  6912124 atatcaaatcctttcaaagacgcatatttcaaaaccacgtttcacaacatatcaaaactactgggaaaatacatacaatcaaattctccatttcaatccc 6912223  T
Q  289 tctactttataaagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatc 388  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  6912224 tctactttataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatatttcaaaccgtatttcccatatc 6912323  T
Q  389 tccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  6912324 tccaaaacacatgtcaaaatatatgcatccaaatctcaatt 6912364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 5706129 - 5706263
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  5706129 atactaggtgcacctaggtcgtcgtcattataatcgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatatttcgcaacataacgaaact 5706228  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    |||||||| ||| ||||||||||| | ||||||||    
T  5706229 tatatcaacatacgttcatcaaaattcaattgaaa 5706263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 28103417 - 28103271
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| | | || ||||| ||||  ||  |||||||| ||| |    
T  28103417 atactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacatatgtctaaaaccatatttcggaacataacaaaact 28103318  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||| ||| ||||||||||||| ||| ||||  ||||||||||    
T  28103317 tatgtcaatatacgttcatcaaaactcaatcgaaaatctactactta 28103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 28059043 - 28059177
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    ||||||||||  |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||| || ||||| ||||  ||| |||||||  ||| |    
T  28059043 atactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataatgaaact 28059142  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    ||| |||| ||| ||||||||||||| ||| ||||    
T  28059143 tatgtcaatataggttcatcaaaactcaatcgaaa 28059177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 28069468 - 28069602
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    ||||||||||  |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||| || ||||| ||||  ||| |||||||  ||| |    
T  28069468 atactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataatgaaact 28069567  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    ||| |||| ||| ||||||||||||| ||| ||||    
T  28069568 tatgtcaatataggttcatcaaaactcaatcgaaa 28069602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 5706477 - 5706565
Alignment:
Q  334 atattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttc-ctatatctccaaaacacatgtcataatatatgcaaccaaa 421  Q
    ||||||||||||||| || |||||||||||| | || |||||||||||| | |||||| |||||| ||||||||| ||||||||| ||||    
T  5706477 atattaatatcgaaaattcccaaaaacatatctctcaaaaccgtatttctccatatct-caaaactcatgtcatagtatatgcaatcaaa 5706565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 200 - 429
Target Start/End: Complemental strand, 3039 - 2810
Alignment:
Q  200 tttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttata 299  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  3039 tttcaaagacgcatatttcaaaaccacatttcacaacatatcaaaactactatgaaaatacatacaatcaaattctgcatttcaatccctctactttata 2940  T
Q  300 aagcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacaca 399  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  2939 aatcgcaagtaagatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatatttcaaaccatatttcccatatctccaaaacaca 2840  T
Q  400 tgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||||||||||||||||||||||||||    
T  2839 tgtcataatatatgcaaccaaatctcaatt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 3256 - 3195
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3256 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 3195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 306 - 428
Target Start/End: Original strand, 4707397 - 4707519
Alignment:
Q  306 aagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacacatgtcat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4707397 aagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcccatatctccaaaacacatgtcat 4707496  T
Q  406 aatatatgcaaccaaatctcaat 428  Q
    |||||||||||||||||||||||    
T  4707497 aatatatgcaaccaaatctcaat 4707519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 167 - 421
Target Start/End: Original strand, 26918064 - 26918320
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttcaaaga-cgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtaca 265  Q
    |||||||||||||||||  | |||||| || |||| |||||| |||||||||||||||||  ||||| |||||||||| |  ||||||||||||| ||||    
T  26918064 aatccaaatcgcgtacaaattaatatctaaccttt-caaagaacgcatatttcaaaaccatgtttcacaacatatcaacaaaactatgaaaatacataca 26918162  T
Q  266 atcaaattctccatttcaatccctctactttataaagcgcaagt-aaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatat 364  Q
    || ||||| ||| |||||||  |||||||||||||| | ||||| ||||| ||||| ||||| ||||||||||||||||| ||| ||||||| |||||||    
T  26918163 atgaaattttccgtttcaatttctctactttataaatcacaagtaaaaattcaaattcaaatggagcgcatattaatatcaaaaatttccaagaacatat 26918262  T
Q  365 ttttc-aaaccgtatttc-ctatatctccaaaacacatgtcataatatatgcaaccaaa 421  Q
     | || |||||||||||| | |||||| |||||| ||||||||| ||||||||||||||    
T  26918263 atctcaaaaccgtatttctccatatct-caaaactcatgtcatagtatatgcaaccaaa 26918320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 18982022 - 18981876
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  18982022 atactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaaagcatatttcggaacataacgaaact 18981923  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||| ||| ||||| ||||||| |||  |||  ||||||||||    
T  18981922 tatgtcaatatacgttcaccaaaactcaatcaaaaatctactactta 18981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 15924539 - 15924478
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaa 74  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  15924539 atactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 15924478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 4707242 - 4707377
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||  ||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |    
T  4707242 atactaggtacacctaggtcgtcgtcattataatcataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 4707341  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| ||||||||||| ||||||||||| ||| ||||    
T  4707342 tatttcaaaatatgtatcatcaaaactcaatcgaaa 4707377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 26917880 - 26918027
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| ||||||| |||||| ||||||||||| |||    ||| | ||||  ||| |||||||| ||| |    
T  26917880 atactaggtgcacctaggtcgtcgtcattataaccataatttttaaaacaccattcttaaaacacaatgctaagaccatatttcacaacataacgaaact 26917979  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactactta 157  Q
    ||| |||||||| || ||||||||||| ||| ||||  ||||||||||    
T  26917980 tatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 26918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 26341069 - 26341204
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||  ||||| ||||| |||||||||| |||| ||||||| ||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  26341069 atactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataacgaaact 26341168  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| |||||||| || ||||||||||| ||||||||    
T  26341169 tatgtcaaaataggtatcatcaaaactcaattgaaa 26341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 28803162 - 28802736
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatat--caaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||  |||    ||||| |||||  || |||||||| ||| |    
T  28803162 atactaggtgcacctaggtcgtcgccattataaccgtaattttcaaaacatcattcttaaatcacagtgctaaaaccatatatcacaacataacgaaact 28803063  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaaggctactactta---------gtaaatttgaatccaaatcgcgtacatgtcaatatcgaatctt 200  Q
    | | |||||||| || ||||||||||| ||| |||   ||||||||||         |||||||  ||||| |||||  ||||  |  |||   || | |    
T  28803062 tgtttcaaaatacgtatcatcaaaactcaatcgaagatctactacttaaaatcataagtaaattcaaatccgaatcgtatacaaat--ataattaaacct 28802965  T
Q  201 ttcaaagacgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataa 300  Q
    || ||| |||||||||||||  |||| ||||| | ||||||||||| | || |||||||| || |||| ||| |||| |||||||  || ||||||||||    
T  28802964 ttgaaaaacgcatatttcaaccccacgtttcacaccatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataa 28802865  T
Q  301 agcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttcctatatctccaaaacaca 399  Q
    | | ||||||||||||||||||||||  |||||||||||| ||||||| ||| |||||| || | | || ||||||||||||| |||||| |||||| ||    
T  28802864 atcacaagtaaaatccaaatccaaatgaagcgcatattaacatcgaaaattttcaaaaatatgtatctcaaaaccgtatttcccatatct-caaaactca 28802766  T
Q  400 tgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||  |||||||| |||||||||||||    
T  28802765 tgtcattgtatatgcagccaaatctcaatt 28802736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 36264980 - 36265114
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||  |||||||||||||| ||||| |||||| ||| || ||||| ||||  ||  ||||| || ||| |    
T  36264980 atactaggtgaacctaggtcgtcgtcattataattgtaattttcaaaacctcatttttaaaacacatgtctaaaaccatatttcgtaacattacaaaact 36265079  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    |||||||| ||||||||||||||||| ||||||||    
T  36265080 tatatcaacatatgttcatcaaaactcaattgaaa 36265114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22010837 - 22010790
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaa 60  Q
    |||||||||| ||||||||| || |||||||||| |||||||||||||    
T  22010837 atactaggtgcacctaggtcgtcatcattataactgtaattttcaaaa 22010790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 217 - 124
Alignment:
Q  336 attaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  217 attaatatcaaaagtttccaaaaacatatttttcaaaccgtatttcccatatcaccaaaacacatgtcataatatatgcaaccaaatctcaatt 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 4353 - 4260
Alignment:
Q  336 attaatatcgaaagtttccaaaaacatatttttcaaaccgtatttcctatatctccaaaacacatgtcataatatatgcaaccaaatctcaatt 429  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  4353 attaatatcaaaagtttccaaaaacatatttttcaaaccgtatttcccatatcaccaaaacacatgtcataatatatgcaaccaaatctcaatt 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 390 - 255
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |    
T  390 atactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaact 291  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| |||||||| || ||||||||||| ||| ||||    
T  290 tatttcaaaatacgtatcatcaaaactcaatcgaaa 255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 4515 - 4391
Alignment:
Q  24 acctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatttatatcaaaat 121  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||    ||||| ||||  ||| |||||||| ||| |||| |||||||    
T  4515 acctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaat 4416  T
Q  122 atgt-tcatcaaaactaaattgaaa 145  Q
    | || ||||||||||| ||| ||||    
T  4415 acgtatcatcaaaactcaatcgaaa 4391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 429
Target Start/End: Complemental strand, 15598014 - 15597793
Alignment:
Q  208 acgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataaagcgcaa 307  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||| ||| |||| || |||||||| |||| |||||||  || ||||||||||| | |||    
T  15598014 acgcatatttcaaaaccacgtttcacaacatatcaaaacaactacgaatatacataaaatcaaatcctccgtttcaatttctttactttataaatcacaa 15597915  T
Q  308 gtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatttttc-aaaccgtatttcctatatctccaaaacacatgtcata 406  Q
    |||||||||||||||| ||  ||| |||||||| || |||| ||  ||| ||||||| | || |||||||| |||| | |||  |||||| ||||||||     
T  15597914 gtaaaatccaaatccacatgaagcacatattaacatagaaaattctcaagaacatatatctcaaaaccgtaattcccacatc-acaaaactcatgtcatt 15597816  T
Q  407 atatatgcaaccaaatctcaatt 429  Q
     ||||||||||||||||||||||    
T  15597815 gtatatgcaaccaaatctcaatt 15597793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 5520064 - 5520198
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  5520064 atactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatatttcgcaacataacaaaact 5520163  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaa 145  Q
    || ||||| ||| ||||||||||||| ||| ||||    
T  5520164 tagatcaacatacgttcatcaaaactcaatcgaaa 5520198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 42785091 - 42784945
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  42785091 atactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaaaccatatttcggaacataacgaaact 42784992  T
Q  111 tatatcaaaatatgttcatcaaaactaaattgaaaggctactactta 157  Q
    ||| || | ||| ||||||||||||| ||| ||||  ||||||||||    
T  42784991 tatgtcgatatacgttcatcaaaactcaatcgaaaatctactactta 42784945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 32745046 - 32745157
Alignment:
Q  36 gtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatttatatcaaaatatgttcatcaaa 133  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||| || ||||| ||||  ||  |||||||| |||  | |||||||||| ||||||||||    
T  32745046 gtcattataaccgaaattttcaaaaccccattcttcaaacacatgtctaaaaccatatttcgcaacataacgaaacatgtatcaaaatacgttcatcaaa 32745145  T
Q  134 actaaattgaaa 145  Q
    ||| ||| ||||    
T  32745146 acttaatcgaaa 32745157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 27199095 - 27199149
Alignment:
Q  167 aatccaaatcgcgtacatgtcaatatcgaatcttttc-aaagacgcatatttcaa 220  Q
    |||||||||||||||||| | |||||| ||||||||| ||| |||||||||||||    
T  27199095 aatccaaatcgcgtacatattaatatcaaatcttttcaaaaaacgcatatttcaa 27199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 348
Target Start/End: Complemental strand, 10292 - 10152
Alignment:
Q  208 acgcatatttcaaaaccacatttcaaaacatatcaaaactactatgaaaatacgtacaatcaaattctccatttcaatccctctactttataaagcgcaa 307  Q
    |||||||||||||  |||| ||||| ||||| ||||||| | || |||||||| || |||| ||| |||| |||||||   | ||||||||||| | |||    
T  10292 acgcatatttcaaccccacgtttcacaacatgtcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttttttactttataaatcacaa 10193  T
Q  308 gtaaaatccaaatccaaatagagcgcatattaatatcgaaa 348  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  10192 gtaaaatccaaatccaaatgaagcgcatattaacatcgaaa 10152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 8249 - 8384
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||||||||| ||||| |||||||||| |||| ||||||| ||||||||||| ||| || ||||| ||||  ||  |||||||  ||| |    
T  8249 atactaggtgcacctaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataaggaaact 8348  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| |||||||| || ||||||||||| ||||||||    
T  8349 tatgtcaaaataggtatcatcaaaactcaattgaaa 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 11230 - 11365
Alignment:
Q  13 atactaggtggacctaggtcatcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatt 110  Q
    |||||||||| ||  ||||| ||||| |||||||||| |||| ||||||| ||||||||||| ||| || ||||| ||||  ||  |||||||| ||| |    
T  11230 atactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataacgaaact 11329  T
Q  111 tatatcaaaatatgt-tcatcaaaactaaattgaaa 145  Q
    ||| |||||||| || ||||||||||| ||||||||    
T  11330 tatgtcaaaataggtatcatcaaaactcaattgaaa 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 4308 - 4414
Alignment:
Q  42 ataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatttatatcaaaatatgt-tcatcaaaactaa 138  Q
    ||||| ||| ||||||||||| ||||||||||| ||| || ||||| ||||  | | |||||||| |||||||| ||||||||||| ||||||||| | |    
T  4308 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 4407  T
Q  139 attgaaa 145  Q
    |||||||    
T  4408 attgaaa 4414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 5662 - 5768
Alignment:
Q  42 ataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcata--tcaaaacataaccaaatttatatcaaaatatgt-tcatcaaaactaa 138  Q
    ||||| ||| ||||||||||| ||||||||||| ||| || ||||| ||||  | | |||||||| |||||||| ||||||||||| ||||||||| | |    
T  5662 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 5761  T
Q  139 attgaaa 145  Q
    |||||||    
T  5762 attgaaa 5768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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