View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_13 (Length: 425)
Name: NF1523_low_13
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Complemental strand, 38119627 - 38119213
Alignment:
| Q |
10 |
aagaatatacattaaataaatggtaggtattgaaaatgacagaagatagcttgcatagaagtagctacttggtcaaagatatacctaagggattgacttt |
109 |
Q |
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| T |
38119627 |
aagaaaatacaataaataaatggtaggtattgaaaatgacagaagatagcttgcatagaagtagctacttggtcaaagatatacctaagggattgacttt |
38119528 |
T |
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| Q |
110 |
gtaaagttggtatgtaactcatgtgaaagttggcagtgacagtaactggaggagactagag-agtagtagtctactgcaattatgcaattttgagttgct |
208 |
Q |
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| T |
38119527 |
gtaaagttggtatgtaactcatgtgaaagttggcagtgacagtaaccggaggagactagagaagtagtagtctactgcaattatgcaattttgagttgct |
38119428 |
T |
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| Q |
209 |
ctaaccatttttcacagaaaagagtctgaggaatcattacaattacactttacaatatatacaatgaggccagcacaatttgtataatactaaaatttnn |
308 |
Q |
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| T |
38119427 |
ctaaccatttttcacagaaaagagtctgaggaatcattacaattacactttacaatatatacaatgaggccagcacaatttgtataatactaaaattt-- |
38119330 |
T |
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| Q |
309 |
nnnnnnnnnnttaaaatatatcatgatgattcttttggagtaagaaaagaattggatgttctaaagtaacaaaggaaaaattgaaattgcttggttaatt |
408 |
Q |
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| T |
38119329 |
taaaaaaaaattaaaatatatcatgatgattcttttggagtaagaaaagaattggatgttctaaagtaacaaaggaaaaattgaaattgcttgtttaatt |
38119230 |
T |
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| Q |
409 |
atggcctaagaagcctt |
425 |
Q |
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| T |
38119229 |
atggcctaagaagcctt |
38119213 |
T |
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