View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_15 (Length: 412)

Name: NF1523_low_15
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_15
NF1523_low_15
[»] chr5 (3 HSPs)
chr5 (306-397)||(28807858-28807949)
chr5 (79-162)||(16053597-16053680)
chr5 (69-201)||(11634908-11635040)
[»] chr3 (12 HSPs)
chr3 (70-206)||(29751790-29751926)
chr3 (62-202)||(30201116-30201256)
chr3 (69-201)||(29648978-29649110)
chr3 (69-206)||(29712919-29713056)
chr3 (62-202)||(30227291-30227431)
chr3 (62-115)||(12570030-12570083)
chr3 (62-115)||(13546494-13546547)
chr3 (65-202)||(30214663-30214799)
chr3 (62-103)||(30223139-30223180)
chr3 (69-206)||(29746959-29747096)
chr3 (69-102)||(36333946-36333979)
chr3 (175-231)||(29721007-29721063)
[»] chr6 (2 HSPs)
chr6 (77-202)||(5569436-5569561)
chr6 (78-202)||(5574415-5574539)
[»] chr1 (2 HSPs)
chr1 (69-203)||(16955669-16955803)
chr1 (65-156)||(16966183-16966274)
[»] chr8 (2 HSPs)
chr8 (69-201)||(1152928-1153060)
chr8 (64-114)||(14934501-14934551)
[»] chr7 (2 HSPs)
chr7 (62-140)||(16644738-16644816)
chr7 (62-140)||(17619099-17619177)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 28807858 - 28807949
Alignment:
Q  306 gattctcaacggatttcaagtaaaaattccgataataatggttttgagttaacttagtggtgtcaaaccatttggcttcccaagttgttttg 397  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28807858 gattcacaacagatttcaagtaaaaattccgataataatggttttgaattaacttagtggtgtcaaaccatttggcttcccaagttgttttg 28807949  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 16053597 - 16053680
Alignment:
Q  79 aggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggat 162  Q
    ||||||||||||||| ||||||||||||||||||||  | |||||||||||||  ||||||| || | |||| ||||| |||||    
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggat 16053680  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 11635040 - 11634908
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    |||||||||||||||||||||| ||  ||||||| ||||| || || | ||||||| || ||||||| ||||  |||||||| ||| | || |||||  |    
T  11635040 gccacatgagaggatccttgcatatgctccaccatagaggacatactatacatgcattttttactatgtcaatggtatcaagcctccgaagaatgtttgt 11634941  T
Q  169 ggttatgtcttttggaagttcaagccagtttgg 201  Q
      | |||||| | |||||||||||||| |||||    
T  11634940 tatgatgtctgtcggaagttcaagccaatttgg 11634908  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 29751926 - 29751790
Alignment:
Q  70 ccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcatg 169  Q
    |||||||||||||||||||||||  |||||||||||||| || |||  || ||||||||| || |||||||  |||||||||||| | || |||||| |     
T  29751926 ccacatgagaggatccttgcaaacgttccaccaaagaggacaaacattacgtgcacttgtcacaatttcaacggtatcaagtctccgaagtatgttcttt 29751827  T
Q  170 gttatgtcttttggaagttcaagccagtttggctttg 206  Q
    || | |||  |||||||||||| ||||||||||||||    
T  29751826 gtcaagtcaattggaagttcaatccagtttggctttg 29751790  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 30201256 - 30201116
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcagga 161  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| |||||   |||||||||||| || |||||||  |||  ||| || || || |    
T  30201256 atggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaa 30201157  T
Q  162 tgttcatggttatgtcttttggaagttcaagccagtttggc 202  Q
    ||||    || |||||||| |||||||||||||| ||||||    
T  30201156 tgttttctgtaatgtctttaggaagttcaagccaatttggc 30201116  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 29649110 - 29648978
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    ||||||||||||||||||| ||||| |||||| | ||||| || || |  |||||| ||||||| |||||||  ||||||| ||  || |||||||| ||    
T  29649110 gccacatgagaggatccttacaaatgttccacgatagaggacatactaggcatgcatttgttacaatttcaacagtatcaactccttgaaggatgttaat 29649011  T
Q  169 ggttatgtcttttggaagttcaagccagtttgg 201  Q
     || |||||| |||||||||||||||| |||||    
T  29649010 tgtgatgtctcttggaagttcaagccaatttgg 29648978  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 29713056 - 29712919
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    ||||||| ||||||||||||||||| |||| ||| | ||  || |||  || ||||||||| || |||||||  ||||||||||| || || |||||| |    
T  29713056 gccacattagaggatccttgcaaatattccgccacaaagaacaaacattacgtgcacttgtcacaatttcaacagtatcaagtctttggagtatgttctt 29712957  T
Q  169 ggttatgtcttttggaagttcaagccagtttggctttg 206  Q
      | | |||| |||||||||||||||| ||||||||||    
T  29712956 catcaggtctattggaagttcaagccaatttggctttg 29712919  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 30227431 - 30227291
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcagga 161  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||   |||||||||||| || || || |  ||| |||| || || || |    
T  30227431 atggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaa 30227332  T
Q  162 tgttcatggttatgtcttttggaagttcaagccagtttggc 202  Q
    ||||  | || |||||| | |||||||||||||| ||||||    
T  30227331 tgtttgttgtgatgtctctaggaagttcaagccaatttggc 30227291  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 12570083 - 12570030
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacaca 115  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||    
T  12570083 atggtttgccacatgatagggttcttgcaaattttccaccaaagaggacacaca 12570030  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 13546547 - 13546494
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacaca 115  Q
    ||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||    
T  13546547 atggtttgccacatgatagggttcttgcaaattttccaccaaagaggacacaca 13546494  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 30214799 - 30214663
Alignment:
Q  65 gtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgt 164  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| |||||   |||||||||||| || || ||||  ||| ||||||| || |  ||||    
T  30214799 gtgtgccatataagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatctcaatggtaccaagtctttg-aaaatgt 30214701  T
Q  165 tcatggttatgtcttttggaagttcaagccagtttggc 202  Q
    |  | || |||||| | |||||||||||||| ||||||    
T  30214700 ttgttgtgatgtctctaggaagttcaagccaatttggc 30214663  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 30223180 - 30223139
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaa 103  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  30223180 atggtgcgccacatgagaggatccttgcaaatgttccaccaa 30223139  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 29746959 - 29747096
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    ||||||| ||||| |||| ||||||||||| ||| | ||| || |||   | ||||||||| || || ||||  ||| |||||||||| || |||||| |    
T  29746959 gccacattagagggtcctggcaaattttccgccacaaaggacaaacattgcgtgcacttgtcacaatatcaatagtaccaagtctctgaagtatgttctt 29747058  T
Q  169 ggttatgtcttttggaagttcaagccagtttggctttg 206  Q
     || | | || | |||||||||||||||||||||||||    
T  29747059 tgtcaagcctatcggaagttcaagccagtttggctttg 29747096  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 36333946 - 36333979
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccacca 102  Q
    ||||||||||||||||||||||||| ||||||||    
T  36333946 gccacatgagaggatccttgcaaatgttccacca 36333979  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 29721063 - 29721007
Alignment:
Q  175 gtcttttggaagttcaagccagtttggctttgcgttgcactcatcttccatttccat 231  Q
    |||| |||||||||||||||| ||||||||||   ||| |||| |||||||||||||    
T  29721063 gtctcttggaagttcaagccaatttggctttggtgtgctctcaacttccatttccat 29721007  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 5569436 - 5569561
Alignment:
Q  77 agaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcatggttatgt 176  Q
    ||||||||||||||||| |||||||| ||||| |||||   |||||||||||||||||  ||||  |||||||| || || ||||||||||  || ||||    
T  5569436 agaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgt 5569535  T
Q  177 cttttggaagttcaagccagtttggc 202  Q
    || |||||||| ||||||| ||||||    
T  5569536 ctcttggaagtgcaagccaatttggc 5569561  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 5574415 - 5574539
Alignment:
Q  78 gaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcatggttatgtc 177  Q
    |||||||||||||||| |||||||| ||||| |||||   |||||||||||||||||  ||||  |||||||| || || ||||||||||  || |||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgttcaccgtgatgtc 5574514  T
Q  178 ttttggaagttcaagccagtttggc 202  Q
    | |||||||| ||||||| ||||||    
T  5574515 tcttggaagtgcaagccaatttggc 5574539  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 16955669 - 16955803
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||   |||| ||||||| || |||||||  |||||||| ||||| || ||||| ||    
T  16955669 gccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgtttat 16955768  T
Q  169 ggttatgtcttttggaagttcaagccagtttggct 203  Q
     |  |  |||||||| ||||||||||| |||||||    
T  16955769 tgccaaatcttttggtagttcaagccaatttggct 16955803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 16966183 - 16966274
Alignment:
Q  65 gtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctg 156  Q
    |||||||||||| |||||||||||||||| |||||||| | ||| |||||   |||| ||||||| ||||||||||  |||||||| |||||    
T  16966183 gtgtgccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaagcctctg 16966274  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 1152928 - 1153060
Alignment:
Q  69 gccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaagtgtatcaagtctctgcaggatgttcat 168  Q
    ||||||| ||||||||||||||||| | |||||| ||||| || |||  || |||||||||||| |||||||  ||||| ||||| || ||||||||| |    
T  1152928 gccacattagaggatccttgcaaatgtgccaccacagaggacaaacattacgtgcacttgttacaatttcaacagtatccagtctttgaaggatgttcct 1153027  T
Q  169 ggttatgtcttttggaagttcaagccagtttgg 201  Q
      | | |||| ||||||||| |||||| |||||    
T  1153028 tatcaagtctattggaagttgaagccaatttgg 1153060  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 14934501 - 14934551
Alignment:
Q  64 ggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacac 114  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  14934501 ggtgtgccacatgtgaggatccttgaaaatattccaccaaagagggcacac 14934551  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 16644738 - 16644816
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaa 140  Q
    |||||| ||||||||||||| ||||||||||| |||||||| ||||  ||||| |   |||||||||| || |||||||    
T  16644738 atggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaa 16644816  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 17619099 - 17619177
Alignment:
Q  62 atggtgtgccacatgagaggatccttgcaaattttccaccaaagagggcacacaacacatgcacttgttactatttcaa 140  Q
    |||||| ||||||||||||| ||||||||||| |||||||| ||||  ||||| |   |||||||||| || |||||||    
T  17619099 atggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacactagggatgcacttgtcacaatttcaa 17619177  T

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