View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_low_16 (Length: 409)
Name: NF1523_low_16
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 4 - 395
Target Start/End: Original strand, 37359719 - 37360110
Alignment:
| Q |
4 |
agtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37359719 |
agtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaat |
37359818 |
T |
|
| Q |
104 |
tagtttctcagcgtctccttgctcacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttccgtgttcgcaatacttttg |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37359819 |
tagtttctcaacgtctccttgctcacggatatgaggtataaatactgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttg |
37359918 |
T |
|
| Q |
204 |
ttatagatatagattgatttatttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37359919 |
ttatagatatagattgatttatttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattct |
37360018 |
T |
|
| Q |
304 |
cttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37360019 |
cttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcaccgaaat |
37360110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 4 - 395
Target Start/End: Complemental strand, 37368345 - 37367954
Alignment:
| Q |
4 |
agtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37368345 |
agtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaat |
37368246 |
T |
|
| Q |
104 |
tagtttctcagcgtctccttgctcacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttccgtgttcgcaatacttttg |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
37368245 |
tagtttctcaacgtctccttgctcacggatatgaggtataaatactgaaaggaactattatttgtggatgcttttactttccgtgttagcaatacttttg |
37368146 |
T |
|
| Q |
204 |
ttatagatatagattgatttatttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37368145 |
ttatagatatagattgatttatttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattct |
37368046 |
T |
|
| Q |
304 |
cttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37368045 |
cttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcacagaaat |
37367954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 28 - 393
Target Start/End: Original strand, 37374562 - 37374930
Alignment:
| Q |
28 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| || | |||||||||||||||| || |
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|
| T |
37374562 |
ccaccaagaggttggaattcctatgatgcattttcctggataatttctgaacaagaattcttacagaatgctcaaattgtttctcagcgtctccgtgtgt |
37374661 |
T |
|
| Q |
128 |
acggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttccgtgttcgcaatacttttgttatagatatagatt---gattta |
224 |
Q |
| |
|
| ||||||||||||||||| ||||||||| ||| ||| | ||| ||||||||| | || | || || |||||||||||||||| || || |
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|
| T |
37374662 |
atggatatgaggtataaatactgaaaggaaatatagtttataaatgtttttactttactgcatcatagtaaattggttatagatatagattattgaattc |
37374761 |
T |
|
| Q |
225 |
tttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattctcttggattcgacgtgatcgat |
324 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||| |
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|
| T |
37374762 |
cttgtttctacctttgtagtatgttgtcgtcgattacctctggtataggaagaatgtcccgggtgctaatatgaattctcttggattcgacgtgattgat |
37374861 |
T |
|
| Q |
325 |
caatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaa |
393 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| ||||| |||| |||||||||| |||| |
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|
| T |
37374862 |
caatggggaaggatggtccctgatccagtcaggtggccttcttccaatggtggaaatggattcagtgaa |
37374930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 2 - 393
Target Start/End: Original strand, 37381872 - 37382272
Alignment:
| Q |
2 |
agagtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctga |
101 |
Q |
| |
|
||||| ||||||| |||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
37381872 |
agagtaacatacagcaagtaggcttgccaccaagaggttggaattcctatgatgccttttcctggataatttctgaacaagagttcttacagaatgctga |
37381971 |
T |
|
| Q |
102 |
attagtttctcagcgtctccttgctcacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttactttcc-gtgttcgcaatactt |
200 |
Q |
| |
|
| | ||||||||||||||| | | || ||||| ||||||||||| |||| ||||||| || |||||| ||| ||||| | | || | | ||||| |
|
|
| T |
37381972 |
aattatttctcagcgtctccgtccacatggatacgaggtataaataccgaaacgaactatagcttatggatggtttcactttactgcattagtagtactt |
37382071 |
T |
|
| Q |
201 |
ttgttatagatatagattgatttatttgtttctacattt--------gtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctc |
292 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
37382072 |
tggttatatatatagattgatttatttgcttctactgttctacccttgtagtatgttgtggtggattacctctggtataggaagaaagtcccgggtgctt |
37382171 |
T |
|
| Q |
293 |
atagtaattctcttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactga |
392 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
37382172 |
atagtgattcccttggattcgacgtgattgataaatggggaaggatggttcctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtga |
37382271 |
T |
|
| Q |
393 |
a |
393 |
Q |
| |
|
| |
|
|
| T |
37382272 |
a |
37382272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 383
Target Start/End: Complemental strand, 41230715 - 41230346
Alignment:
| Q |
2 |
agagtgacatacaacaagctgcctttccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctga |
101 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||| ||||||||||| ||| | ||||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
41230715 |
agagtgacctacaacaagctgctttgccaccaagagggtggaattcctacgattcattttcgtggataatatctgaagaagaattcttacagaatgctga |
41230616 |
T |
|
| Q |
102 |
attagtttctcagcgtctccttgctcacggatatgaggtataaattttgaaaggaactattatttgtggatgcttttacttt-ccgtgttcgcaatactt |
200 |
Q |
| |
|
| |||||||||||||||| | |||||| |||||||||||||||| ||||| |||| || ||||||||| | | || | | | ||| |
|
|
| T |
41230615 |
aatagtttctcagcgtcttcatgctcatggatatgaggtataaacactgaaatgaac-------------tgattttactttactgcattagtagtgctt |
41230529 |
T |
|
| Q |
201 |
ttgttatagatatagattgatttatttgtttctacatttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaat |
300 |
Q |
| |
|
| |||||||||||| |||||||| ||||||||||| ||||||| |||||| || |||| ||||||||||||||||||||| | |||||| || | || |
|
|
| T |
41230528 |
tggttatagatatatattgatttctttgtttctacccttgtagtttgttgtggtggatttcctctggtataggaagaaagttgcaggtgctaatgttgat |
41230429 |
T |
|
| Q |
301 |
tctcttggattcgacgtgatcgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatgg |
383 |
Q |
| |
|
|||| |||||| |||||||| ||| ||||||||||||||| ||||||||||| |||||||||||| ||| | |||||||||| |
|
|
| T |
41230428 |
tctcgtggatttgacgtgattgatgaatggggaaggatggtccctgatccaggaaggtggccttcttcccatggtgggaatgg |
41230346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 39243094 - 39243208
Alignment:
| Q |
28 |
ccaccaagaggttggaattcctatgatgccttttcttggataatttctgaagaagaattcttacaaaatgctgaattagtttctcagcgtctccttgctc |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||| |||| || ||||||||||||| |||| | || |
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|
| T |
39243094 |
ccaccaagaggttggaattcctatgattgcttttgctggataatttctgaacaagagttcttacaaagtgctcaaatagtttctcagcggctccgcgatc |
39243193 |
T |
|
| Q |
128 |
acggatatgaggtat |
142 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
39243194 |
atggatacgaggtat |
39243208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 365
Target Start/End: Original strand, 39243279 - 39243406
Alignment:
| Q |
238 |
ttgtagtatgttgtcgtcgattacctctggtataggaagaaagtcccgggtgctcatagtaattctcttggattcgacgtgatcgatcaatggggaagga |
337 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||| | |||||| | ||||||| || | |||||||||||||||| ||||| ||| ||||||| |||| |
|
|
| T |
39243279 |
ttgtagtatgttgtggtggattatctctggtatagaaggaaagttcagggtgcttatcatgattctcttggattcgatgtgattgatgaatgggggagga |
39243378 |
T |
|
| Q |
338 |
tggcccctgatccagtaaggtggccttc |
365 |
Q |
| |
|
|| ||||| |||| |||||||||||| |
|
|
| T |
39243379 |
tgattcctgacccagaaaggtggccttc |
39243406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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