View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_17 (Length: 401)

Name: NF1523_low_17
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_17
NF1523_low_17
[»] chr7 (6 HSPs)
chr7 (159-378)||(33249221-33249440)
chr7 (161-313)||(14238469-14238618)
chr7 (189-313)||(46290695-46290820)
chr7 (193-301)||(2836591-2836699)
chr7 (55-84)||(14238692-14238721)
chr7 (55-84)||(33249515-33249544)
[»] chr1 (2 HSPs)
chr1 (161-313)||(5041948-5042100)
chr1 (55-86)||(5042172-5042203)
[»] chr4 (3 HSPs)
chr4 (161-313)||(33572180-33572332)
chr4 (55-86)||(33572078-33572109)
chr4 (55-86)||(53841486-53841517)
[»] chr5 (2 HSPs)
chr5 (189-313)||(32658087-32658211)
chr5 (55-84)||(32657984-32658013)
[»] chr2 (1 HSPs)
chr2 (189-313)||(38376176-38376300)
[»] chr3 (2 HSPs)
chr3 (189-313)||(43147908-43148033)
chr3 (189-295)||(24929361-24929466)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 159 - 378
Target Start/End: Complemental strand, 33249440 - 33249221
Alignment:
Q  159 gattcatatataaattaatgcagnnnnnnnattctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgt 258  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33249440 gattcatatataaattaatgcagtttttttattctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgt 33249341  T
Q  259 ttaaaatattttaacgtattcagttaattaaagcaatgcattacaatcgttttat-nnnnnnnntacaagggagattatcatactatttaattaaactat 357  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||         ||||| ||||||||||| ||||||||||||||||||    
T  33249340 ttaaaatattttaacgtattcaattaattaaagcaatgcattacaatcgttttataaaaaaaaatacaa-ggagattatcacactatttaattaaactat 33249242  T
Q  358 ttttatcaaatcctatgttgt 378  Q
    |||||||||||||||||||||    
T  33249241 ttttatcaaatcctatgttgt 33249221  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 161 - 313
Target Start/End: Complemental strand, 14238618 - 14238469
Alignment:
Q  161 ttcatatataaattaatgcagnnnnnnnattctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgttt 260  Q
    |||||||||||||||||||||       |||||||||||||||| ||||  ||||||||||| ||||||||||||| || |||||    |||||||||||    
T  14238618 ttcatatataaattaatgcagtttttttattctaatttaattaaaaaattgaattgattatttttacacagaaattggactacttg---attaattgttt 14238522  T
Q  261 aaaatattttaacgtattcagttaattaaagcaatgcattacaatcgttttat 313  Q
    |||||| ||||||||| ||| ||||||||| |||| ||||||||| |||||||    
T  14238521 aaaatagtttaacgtagtcaattaattaaatcaattcattacaatagttttat 14238469  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 46290695 - 46290820
Alignment:
Q  189 attctaatttaattaagaaa-tgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaatt 287  Q
    |||||||||||||||| ||| | |||||||||||| ||||| || |||||||||||||||||||||||| || ||||||||||||| || ||||||||||    
T  46290695 attctaatttaattaaaaaaattaaattgattatttttacaaaggaattagattactttttaattaatttttaaaaatattttaacatagtcagttaatt 46290794  T
Q  288 aaagcaatgcattacaatcgttttat 313  Q
    ||| |||| ||||||| | |||||||    
T  46290795 aaatcaattcattacactagttttat 46290820  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 2836591 - 2836699
Alignment:
Q  193 taatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaattaaagc 292  Q
    |||||||||||| |||| ||||||| |||| ||||| || ||||| |||||||||||||||||| |||||||||||||||| || || |||||||||| |    
T  2836591 taatttaattaaaaaattaaattgagtatttttacatagtaattaaattactttttaattaattctttaaaatattttaacatagtcggttaattaaatc 2836690  T
Q  293 aatgcatta 301  Q
    ||| |||||    
T  2836691 aattcatta 2836699  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 14238721 - 14238692
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatat 84  Q
    ||||||||||||||||||||||||||||||    
T  14238721 tgtgtttaatttttgaaaagactaaaatat 14238692  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 33249544 - 33249515
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatat 84  Q
    ||||||||||||||||||||||||||||||    
T  33249544 tgtgtttaatttttgaaaagactaaaatat 33249515  T

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Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 161 - 313
Target Start/End: Complemental strand, 5042100 - 5041948
Alignment:
Q  161 ttcatatataaattaatgcagnnnnnnnattctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgttt 260  Q
    |||||||||||||||||||||       |||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||| || |||||||||||    
T  5042100 ttcatatataaattaatgcagtttttttattctaatttaattaagaaattgaattgattatttttacacagaaattagactacttcttgattaattgttt 5042001  T
Q  261 aaaatattttaacgtattcagttaattaaagcaatgcattacaatcgttttat 313  Q
    |||||| ||||||||| ||| ||||||||| |||| ||||||||| |||||||    
T  5042000 aaaatagtttaacgtagtcaattaattaaatcaattcattacaatagttttat 5041948  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 5042203 - 5042172
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatatcc 86  Q
    ||||||||||||||||||||||||||||||||    
T  5042203 tgtgtttaatttttgaaaagactaaaatatcc 5042172  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 313
Target Start/End: Original strand, 33572180 - 33572332
Alignment:
Q  161 ttcatatataaattaatgcagnnnnnnnattctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgttt 260  Q
    |||||||||||||||||||||       |||||||||||||||||||||  ||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  33572180 ttcatatataaattaatgcagtttttttattctaatttaattaagaaattgaattgattatttttacacagaaattggactacttcttgattaattgttt 33572279  T
Q  261 aaaatattttaacgtattcagttaattaaagcaatgcattacaatcgttttat 313  Q
    |||||||||||||||| | | ||||||||| |||| ||||||||| |||||||    
T  33572280 aaaatattttaacgtagtaaattaattaaatcaattcattacaatagttttat 33572332  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 33572078 - 33572109
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatatcc 86  Q
    ||||||||||||||||||||||||||||||||    
T  33572078 tgtgtttaatttttgaaaagactaaaatatcc 33572109  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 53841517 - 53841486
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatatcc 86  Q
    ||||||||||||||||||||||||||||||||    
T  53841517 tgtgtttaatttttgaaaagactaaaatatcc 53841486  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 32658087 - 32658211
Alignment:
Q  189 attctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaatta 288  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||| || ||||||||||||||||| ||||||||| ||| | |||||    
T  32658087 attctaatttaattaagaaattgaattgattatttttacacagaaattagactacttcttgattaattgtttaaaatagtttaacgtagtcaatcaatta 32658186  T
Q  289 aagcaatgcattacaatcgttttat 313  Q
    || |||| ||||||||| |||||||    
T  32658187 aaccaattcattacaatagttttat 32658211  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 32657984 - 32658013
Alignment:
Q  55 tgtgtttaatttttgaaaagactaaaatat 84  Q
    ||||||||||||||||||||||||||||||    
T  32657984 tgtgtttaatttttgaaaagactaaaatat 32658013  T

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Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 38376300 - 38376176
Alignment:
Q  189 attctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaatta 288  Q
    |||||||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||||||| || ||||||||||||| || || ||||||||    
T  38376300 attctaatttaattaaaaaattaaattgattatttttacaaaggaattagattactttttaattaatttttaaaaatattttaacatagtcggttaatta 38376201  T
Q  289 aagcaatgcattacaatcgttttat 313  Q
    || |||| ||||||| | |||||||    
T  38376200 aatcaattcattacactagttttat 38376176  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 313
Target Start/End: Original strand, 43147908 - 43148033
Alignment:
Q  189 attctaatttaattaagaaa-tgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaatt 287  Q
    ||||||| |||||||| ||| | |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||| || || |||||||    
T  43147908 attctaacttaattaaaaaaattaaattgattatttttatacagtaattagattactttttaattaattctttaaaatattttaacatagtcggttaatt 43148007  T
Q  288 aaagcaatgcattacaatcgttttat 313  Q
    ||| |||| ||||||| | |||||||    
T  43148008 aaatcaattcattacactagttttat 43148033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 24929361 - 24929466
Alignment:
Q  189 attctaatttaattaagaaatgaaattgattattcttacacagaaattagattactttttaattaattgtttaaaatattttaacgtattcagttaatta 288  Q
    |||| ||||||||||||||||  ||||||| ||| ||||||| ||||||||||| |||||||||| || || ||||||||||||| || ||| |||||||    
T  24929361 attccaatttaattaagaaattgaattgataatttttacacaaaaattagattaatttttaattagtttttaaaaatattttaac-tagtcaattaatta 24929459  T
Q  289 aagcaat 295  Q
    || ||||    
T  24929460 aaacaat 24929466  T

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