View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_18 (Length: 401)
Name: NF1523_low_18
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 27666942 - 27666759
Alignment:
| Q |
6 |
agtgagatgaaatgcgcaaaattgggttgctgaaatgtgcccttgatggtgtagatggatgttgtggtccttcagctttcattgctgataatatcttctg |
105 |
Q |
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| T |
27666942 |
agtgggatgaaatgcgcaaaattgggttgctgaaatgtgcccttgatggtgtagatggatgctgtggtccttcagctatcattgcttataatatcttctg |
27666843 |
T |
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| Q |
106 |
gttcatgtctcattcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttccttccctt |
189 |
Q |
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| T |
27666842 |
gttcatgtctcattcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttccttccctt |
27666759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 27672281 - 27672113
Alignment:
| Q |
29 |
gggttgctgaaatgtgcccttgatggtgtagatggatgttgtggtccttcagct-ttcattgctgataatatcttctggttcatgtctcattcaatgcag |
127 |
Q |
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| T |
27672281 |
gggtcgctgaaatgtgtccttgatggtgtatatgaatgttgtggtcctccagctattgattgctgataatatattccagtacatgtctcattcaatgcag |
27672182 |
T |
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| Q |
128 |
ctgtg----aaaagaataggctgacaattcttgctggttagcattctggtggtttttccttcccttttc |
192 |
Q |
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| T |
27672181 |
ctatggaaagaaagaataggctaacaattcttgctggttagcattctggtgggttttcctacctttttc |
27672113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 27671977 - 27671931
Alignment:
| Q |
223 |
attcattggatttattcttgagttagttacttttcaaaagtgtggaa |
269 |
Q |
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| T |
27671977 |
attcattggatttattcttgagtcagttacttttgagaagtgtggaa |
27671931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 227309 - 227248
Alignment:
| Q |
119 |
tcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttc |
181 |
Q |
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| T |
227309 |
tcaatgcagctatgaaa-gaataggctgacaattattgctggctagcattctggtgatttttc |
227248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 703722 - 703661
Alignment:
| Q |
119 |
tcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttc |
181 |
Q |
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| T |
703722 |
tcaatgcagctatgaaa-gaataggctgacaattattgctggctagcattctggtgatttttc |
703661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 740932 - 740871
Alignment:
| Q |
119 |
tcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttc |
181 |
Q |
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| T |
740932 |
tcaatgcagctatgaaa-gaataggctgacaattattgctggctagcattctggtgatttttc |
740871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 864827 - 864766
Alignment:
| Q |
119 |
tcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttttc |
181 |
Q |
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| T |
864827 |
tcaatgcagctatgaaa-gaataggctgacaattattgctggctagcattctggtgatttttc |
864766 |
T |
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