View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_2 (Length: 650)

Name: NF1523_low_2
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_2
NF1523_low_2
[»] chr7 (1 HSPs)
chr7 (5-347)||(11033941-11034269)
[»] chr1 (2 HSPs)
chr1 (5-221)||(15076792-15077004)
chr1 (250-322)||(15076723-15076795)
[»] chr5 (2 HSPs)
chr5 (5-221)||(18667779-18667989)
chr5 (250-347)||(18667986-18668083)
[»] chr3 (13 HSPs)
chr3 (79-235)||(21941419-21941570)
chr3 (54-235)||(22182424-22182600)
chr3 (178-312)||(21929001-21929135)
chr3 (507-632)||(21928735-21928860)
chr3 (12-147)||(21929143-21929279)
chr3 (236-348)||(21940974-21941086)
chr3 (507-632)||(21940690-21940823)
chr3 (458-508)||(21928888-21928938)
chr3 (577-618)||(22038232-22038273)
chr3 (458-507)||(21940852-21940901)
chr3 (577-632)||(22039950-22040006)
chr3 (236-348)||(22040234-22040344)
chr3 (12-61)||(21941606-21941655)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 11034269 - 11033941
Alignment:
Q  5 gagtgagatgaactaagctgcatttatgcatcactgaagtaacagtgactaatgtaaccaaccaataccccttaatgaatcactaaatttttgcctcagc 104  Q
    |||||| |||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||     
T  11034269 gagtgaaatgaactaagctgcaaaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcactaaatttttgcc--agg 11034172  T
Q  105 ctactatcactaaatctagtcatttgtagataa-catgttaatagtattataatactgtccaacacatcaatagataaagctatgaacactccatgatgt 203  Q
     |||||||        ||||||||||||||||| ||||||||||  |     ||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  11034171 atactatc--------tagtcatttgtagataaacatgttaatacca-----atactatccaacacatctataaataaagctatgaacactccatgatgt 11034085  T
Q  204 taaatttgaaccgttcaatatctcatgaatcatttactgtgcagtatcaagataaatatttatccatagcttaaggggttgattctaatatccactttat 303  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  11034084 taaatttgaactgttcaatatctcgtgaatcatttactgtgcaatatcaagttaaatatttatccatagcttaaagggttgattctaatatcaactttat 11033985  T
Q  304 cctgctacatgaatcatgatggtagaagcaaaactcacccacac 347  Q
    ||||||||||||||||||| |||| |||||| ||| ||||||||    
T  11033984 cctgctacatgaatcatgacggtaaaagcaatactgacccacac 11033941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 15077004 - 15076792
Alignment:
Q  5 gagtgagatgaactaagctgcatttatgcatcactgaagtaacagtgactaatgtaaccaaccaataccccttaatgaatcactaaatttttgcctcagc 104  Q
    |||||| |||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  15077004 gagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttcatgaatcacaaaatttttgccccagc 15076905  T
Q  105 ctactatcactaaatctagtcatttgtagata-acatgttaatagtattataatactgtccaacacatcaatagataaagctatgaacactccatgatgt 203  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||      |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  15076904 ctactatcactaaatctattcatttgtagatacacatgttaatag-----caatactatccaacacatctatagataaagctatgaacactccatgatgt 15076810  T
Q  204 taaatttgaaccgttcaa 221  Q
    ||||||||||||||||||    
T  15076809 taaatttgaaccgttcaa 15076792  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 15076795 - 15076723
Alignment:
Q  250 tcaagataaatatttatccatagcttaaggggttgattctaatatccactttatcctgctacatgaatcatga 322  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  15076795 tcaagttaaatatttatccatagcttaaagggtcgattctaatatcaactttatcctgctacatgaatcatga 15076723  T

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Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 18667779 - 18667989
Alignment:
Q  5 gagtgagatgaactaagctgcatttatgcatcactgaagtaacagtgactaatgtaaccaaccaataccccttaatgaatcactaaatttttgcctcagc 104  Q
    |||||| |||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||  |||  | ||||    
T  18667779 gagtgaaatgaactaagctgcacaaatgcatcactgaagtaacagtggctaatgtaaccaaccaataccacttaatgaatcacaaaaaattt--cccagc 18667876  T
Q  105 ctactatcactaaatctagtcatttgtagata-acatgttaatagtattataatactgtccaacacatcaatagataaagctatgaacactccatgatgt 203  Q
    |||||||||||||||||||||||||||||||| ||||||||||||      |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  18667877 ctactatcactaaatctagtcatttgtagatacacatgttaatag-----caatactatccaacacatctatagataaagctatgaacactccatgatgt 18667971  T
Q  204 taaatttgaaccgttcaa 221  Q
    ||||||||||||||||||    
T  18667972 taaatttgaaccgttcaa 18667989  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 18667986 - 18668083
Alignment:
Q  250 tcaagataaatatttatccatagcttaaggggttgattctaatatccactttatcctgctacatgaatcatgatggtagaagcaaaactcacccacac 347  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||||    
T  18667986 tcaagttaaatatttatccatagcttaaagggtcgattctaatatcaactttatcctgctacatgaatcatgacggtaaaagcaatactcacccacac 18668083  T

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Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 79 - 235
Target Start/End: Complemental strand, 21941570 - 21941419
Alignment:
Q  79 atgaatcactaaatttttgcctcagcctactatcactaaatctagtcatttgtagataacatgttaatagtattataatactgtccaacacatcaataga 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||| |||||    
T  21941570 atgaatcactaaatttttgcctcagcctactatcactaaatctagtcatttgtagataacatgttaatag-----taatactgtccaacacatctataga 21941476  T
Q  179 taaagctatgaacactccatgatgttaaatttgaaccgttcaatatctcatgaatca 235  Q
    |||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  21941475 taaatctatgaacactccatgatgttaaatttgaactgttctatatctcatgcatca 21941419  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 22182600 - 22182424
Alignment:
Q  54 taatgtaaccaaccaataccccttaatgaatcactaaatttttgcctcagcctactatcactaaatctagtcatttgtagataacatgttaatagtatta 153  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         
T  22182600 taatgcaaccaaccaataccagttaatgaatcactaaatttttgcctcagcctactgtcactaaatctagtcatttgtagataacatgttaatag----- 22182506  T
Q  154 taatactgtccaacacatcaatagataaagctatgaacactccatgatgttaaatttgaaccgttcaatatctcatgaatca 235  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||| |||||| ||| ||||    
T  22182505 taatattgtccaacacatctatagataaagctataaacactccatgatgtttaatttgaactgttctatatcttatgcatca 22182424  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 21929135 - 21929001
Alignment:
Q  178 ataaagctatgaacactccatgatgttaaatttgaaccgttcaatatctcatgaatcatttactgtgcagtatcaagataaatatttatccatagcttaa 277  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  21929135 ataaagctatgatgactccatgatgttaaatttaaaccgttcaatatctcatgaatcatttactgtgcagtatcaggttaaatatttatccatagtttaa 21929036  T
Q  278 ggggttgattctaatatccactttatcctgctaca 312  Q
     ||||||||||||||||||||||||||||| ||||    
T  21929035 agggttgattctaatatccactttatcctgttaca 21929001  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 21928860 - 21928735
Alignment:
Q  507 aaatggaggagttagtcaatcggtgagatatttcataagaaaacttcaatcaacaatttgatggtttcagtatcaatgcaactatttcattaccaaagaa 606  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  21928860 aaatggaggagttagtcaattgatgagatatttcataagaaaagttcaatcaacaatttgatggtttcaatatcaatgcaactacttcattaccaaagaa 21928761  T
Q  607 aaatctgtaaaagagaccaaccctat 632  Q
    |||||||||||| |||||||||||||    
T  21928760 aaatctgtaaaacagaccaaccctat 21928735  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 21929279 - 21929143
Alignment:
Q  12 atgaactaagctgcatttatgcatcactgaagtaa-cagtgactaatgtaaccaaccaataccccttaatgaatcactaaatttttgcctcagcctacta 110  Q
    |||||||||||||||   ||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21929279 atgaactaagctgcacaaatgcatcactgaagtaaacagtggccaatgtaaccaaccaataccacttaatgaatcactaaatttttgcctcagcctacta 21929180  T
Q  111 tcactaaatctagtcatttgtagataacatgttaata 147  Q
    |||||||||||||||| | ||||||||||||||||||    
T  21929179 tcactaaatctagtcagtggtagataacatgttaata 21929143  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 21941086 - 21940974
Alignment:
Q  236 tttactgtgcagtatcaagataaatatttatccatagcttaaggggttgattctaatatccactttatcctgctacatgaatcatgatggtagaagcaaa 335  Q
    ||||||||||||||| ||| ||||||||||||||||| | || ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||     
T  21941086 tttactgtgcagtataaagttaaatatttatccataggtgaaagggttgattctaatatcaacttaatcctgctgcatgaatcatgatggtagaagcaat 21940987  T
Q  336 actcacccacaca 348  Q
    |||||||||||||    
T  21940986 actcacccacaca 21940974  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 507 - 632
Target Start/End: Complemental strand, 21940823 - 21940690
Alignment:
Q  507 aaatggaggagttagtcaatcggtgagatatttcataagaaaacttcaatcaa-------caatttgatggtttcagtatcaatgcaactatttcattac 599  Q
    ||||||||||||||||||||   |||||||||||||||||||| |||||||||       ||||||||||  | || ||||||||||||||||| ||| |    
T  21940823 aaatggaggagttagtcaattaatgagatatttcataagaaaagttcaatcaacacataccaatttgatgcctccaatatcaatgcaactatttaattgc 21940724  T
Q  600 caaaga-aaaatctgtaaaagagaccaaccctat 632  Q
    |||||| ||||||||||||| |||||||||||||    
T  21940723 caaagataaaatctgtaaaacagaccaaccctat 21940690  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 508
Target Start/End: Complemental strand, 21928938 - 21928888
Alignment:
Q  458 attgagaagaaaacatgttttctccattcaaataccaaaacaaacatataa 508  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21928938 attgagaagaacacatgttttctccattcaaataccaaaacaaacatataa 21928888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 618
Target Start/End: Complemental strand, 22038273 - 22038232
Alignment:
Q  577 tatcaatgcaactatttcattaccaaagaaaaatctgtaaaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22038273 tatcaatgcaactatttcattaccaaagaaaaatctgtaaaa 22038232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 21940901 - 21940852
Alignment:
Q  458 attgagaagaaaacatgttttctccattcaaataccaaaacaaacatata 507  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  21940901 attgagaataacacatgttttttccattcaaataccaaaacaaacatata 21940852  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 632
Target Start/End: Complemental strand, 22040006 - 22039950
Alignment:
Q  577 tatcaatgcaactatttcattaccaaaga-aaaatctgtaaaagagaccaaccctat 632  Q
    |||||||||||||||||||||||||| || | ||||||||||| |||||||||||||    
T  22040006 tatcaatgcaactatttcattaccaaggatataatctgtaaaacagaccaaccctat 22039950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 22040344 - 22040234
Alignment:
Q  236 tttactgtgcagtatcaagataaatatttatccatagcttaaggggttgattctaatatccactttatcctgctacatgaatcatgatggtagaagcaaa 335  Q
    ||||||||||||||||||  ||||||| |||||||||| ||| |  | |||||||||||  |||| |||||| | | ||||||||||| ||||||||||     
T  22040344 tttactgtgcagtatcaaattaaatatctatccatagcgtaa-gaatcgattctaatataaacttaatcctgttgcgtgaatcatgat-gtagaagcaat 22040247  T
Q  336 actcacccacaca 348  Q
    |||||| ||||||    
T  22040246 actcacgcacaca 22040234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21941655 - 21941606
Alignment:
Q  12 atgaactaagctgcatttatgcatcactgaagtaacagtgactaatgtaa 61  Q
    |||||||||||||||   ||| |||||||||||||||| |||||||||||    
T  21941655 atgaactaagctgcacaaatgtatcactgaagtaacagggactaatgtaa 21941606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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