View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_low_20 (Length: 398)
Name: NF1523_low_20
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_20 |
 | |
|
| [»] scaffold0618 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0618 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Original strand, 6997 - 7382
Alignment:
| Q |
2 |
ggaattataattcataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
101 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6997 |
ggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
7096 |
T |
|
| Q |
102 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7097 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
7196 |
T |
|
| Q |
202 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
7296 |
T |
|
| Q |
302 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcag |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7297 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcag |
7382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 44092914 - 44092529
Alignment:
| Q |
2 |
ggaattataattcataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
101 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44092914 |
ggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
44092815 |
T |
|
| Q |
102 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44092814 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
44092715 |
T |
|
| Q |
202 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44092714 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
44092615 |
T |
|
| Q |
302 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcag |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44092614 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcag |
44092529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 44067414 - 44067036
Alignment:
| Q |
1 |
aggaattataattcataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaatat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
44067414 |
aggaattataatacataactgccgtataaccactgcaaatgatttgaaagcggttcagaattcggttaaaacatatcttggtagaccatggcagaaacat |
44067315 |
T |
|
| Q |
101 |
tcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067314 |
tcaagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatg |
44067215 |
T |
|
| Q |
201 |
gcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44067214 |
gcgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttcagatgcagttaaattttc |
44067115 |
T |
|
| Q |
301 |
tgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44067114 |
tgttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44067036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 2 - 379
Target Start/End: Original strand, 44087696 - 44088073
Alignment:
| Q |
2 |
ggaattataattcataactgccgtataaccgctgcaaatgatttgaaagcggttcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
101 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087696 |
ggaattgtaatacataactgccgtataaccgcatcaagtgatttgaaagcgattcagaattcagttaaaacatatcttggtagaccatggcagaaatatt |
44087795 |
T |
|
| Q |
102 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087796 |
caagaacggttgttatgaaaagtaatcttgatggtttgataaattcagaaggttgggctccatggatgggtggttttgctttgagtacactttattatgg |
44087895 |
T |
|
| Q |
202 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087896 |
cgaatatatgaatgttggtggtggtgctaatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttct |
44087995 |
T |
|
| Q |
302 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087996 |
gttggtaattttttggctggtgattcttggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44088073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 8767261 - 8767322
Alignment:
| Q |
77 |
cttggtagaccatggcagaaatattcaagaacggttgttatgaaaagtaatcttgatggttt |
138 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| | ||||||| | |||||||||||| |
|
|
| T |
8767261 |
cttggtagaccgtggcaaaaatattcaagaacggttttcatgaaaactgttcttgatggttt |
8767322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University