View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_22 (Length: 388)
Name: NF1523_low_22
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 10938189 - 10937832
Alignment:
| Q |
19 |
tctcaagctttttactataacgagcctcacctctccccagaagattacacttggtcattaactctttgtaactcctgccaaaatagatgcaaccacaatt |
118 |
Q |
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| T |
10938189 |
tctcaagctttttactataacgagcctcacctctccccagaagattacacttggtcattaactctttgtaactcctgccaaaatagatgcaaccacaatt |
10938090 |
T |
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| Q |
119 |
taaattccgagaaaagcatagaaaatttaagccaacaaatttcaatttgaagggctaaacttgaattgtggcttcaatatacagaatagtactgcaagca |
218 |
Q |
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| T |
10938089 |
taaattccgagaaaagcatagaaaatttaagccaacaaatttcaaattgaagggctaaacttgaacagtggcttcaatatacagaatagtactgcaagca |
10937990 |
T |
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| Q |
219 |
aagtcccaaaaataaaacagttcttgatttcaaaatcatattggaccatcataaaccttgc-gttcatatatctaaattggaaaagttccttaagcactt |
317 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
10937989 |
aaatcccaaaaataaaacagtcgttgatttcaaaatcatattggaccatcataaactttgcagttcatatatctaaattggaaaaattccttaagcactt |
10937890 |
T |
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| Q |
318 |
aacccttacagccttacagccttatgcttgggaggctgtcaaccattataaaattatactcatctc |
383 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
10937889 |
aac--------ccttacagccttatgcttgggaggctgtcgaccattataaaatgatactcatctc |
10937832 |
T |
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