View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_23 (Length: 370)
Name: NF1523_low_23
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 54 - 370
Target Start/End: Complemental strand, 36936392 - 36936076
Alignment:
| Q |
54 |
ggtcagaatcccaaacgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttcaacccgacactttactat |
153 |
Q |
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| T |
36936392 |
ggtcagaatcccaaatgcccaactcctaggaaagatatacttctccagtctaaatccgggtagaaatgtcctatcatgtttcaacctgacactttactat |
36936293 |
T |
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| Q |
154 |
tttatctgttttatttctcttttggtggtctttagtttagactatgtcgagtttgttgttattgcattcaatttgtcgaaaaaccctaaatgtgtttgac |
253 |
Q |
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| T |
36936292 |
tttatctgttttatttctcttttggtggtctttagtttagactatgtcgagtttgttgttattgtgttcaatttgtcgaaaaaccctaaatatgtttgac |
36936193 |
T |
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| Q |
254 |
cttttggaattgcatcctgaggacattgctaatgtgagatgtctccagcctcgatctcttctacaaccatctaatggtcactttcgagacttcctgtagt |
353 |
Q |
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| T |
36936192 |
cttttggaattgcatcctgaggacattgctaatgtgagatgtctccaacctcgatctcttctaaaaccatctaatggtcactttcgagactacctgtagt |
36936093 |
T |
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| Q |
354 |
caatctgagcatacaaa |
370 |
Q |
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| T |
36936092 |
caatctgagcatacaaa |
36936076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36942470 - 36942413
Alignment:
| Q |
1 |
cacatatcctcattgaaaacctccctctctccattatcaaagctacactcatgggtca |
58 |
Q |
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| T |
36942470 |
cacatatcctcattgaaaacatccctctctccattatcaaagctacactcatgggtca |
36942413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 36957044 - 36956993
Alignment:
| Q |
248 |
tttgaccttttggaattgcatcctgaggacattgctaatgtgagatgtctcca |
300 |
Q |
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| T |
36957044 |
tttgaccttctgaaattgca-cctgaggatattgctaatgcgagatgtctcca |
36956993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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