View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_27 (Length: 359)

Name: NF1523_low_27
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_27
NF1523_low_27
[»] chr5 (11 HSPs)
chr5 (21-359)||(13372875-13373213)
chr5 (118-353)||(13378768-13379003)
chr5 (181-346)||(13412948-13413113)
chr5 (185-309)||(13426188-13426312)
chr5 (181-345)||(13385469-13385633)
chr5 (181-315)||(13389320-13389454)
chr5 (185-335)||(13419297-13419447)
chr5 (185-347)||(13446848-13447010)
chr5 (181-349)||(13393693-13393861)
chr5 (181-315)||(13453797-13453931)
chr5 (21-84)||(13378630-13378693)
[»] chr8 (1 HSPs)
chr8 (149-359)||(28430659-28430869)
[»] chr4 (1 HSPs)
chr4 (181-349)||(47601115-47601283)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 13372875 - 13373213
Alignment:
Q  21 agtgctgaaacagtgtcaataataccatcaagggtgtccattacagcctataacataatgaacagtgttagaagtttataactgatttcatatatagatt 120  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372875 agtgctgaaacagtgtcaataataccatcaaaggtgcccattacagcctataacataatgaacagtgttagaagtttataactgatttcatatatagatt 13372974  T
Q  121 agttattaaaagcgagctattggtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttcttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13372975 agttattaaaagcgagctattggtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttcttt 13373074  T
Q  221 ttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13373075 ttgttaggagaagtgcttatcactgttacattagcaccaaaagctttggtaaatttcacagccatatgacctaatccaccaagaccaaccacacccacat 13373174  T
Q  321 gtaaaccaggcttgttaagtccaaaatatttcaaagggc 359  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13373175 gtaaaccaggcttgttaagtccaaaatatttcaaagggc 13373213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 118 - 353
Target Start/End: Original strand, 13378768 - 13379003
Alignment:
Q  118 attagttattaaaagcgagctattggtacgcacctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttc 217  Q
    |||||| |||||||||||  ||||||||||||||| ||| |||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||    
T  13378768 attagtcattaaaagcgaattattggtacgcaccttcatctggtcttgttcgcgactaaccacgaatgagtcagctcctaagcgttcaatggcttccttc 13378867  T
Q  218 tttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacaccca 317  Q
    ||||||||||||||||| |||| ||| ||||| ||| ||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||| |    
T  13378868 tttttgttaggagaagtacttaccacagttaccttaacaccaaaggctttggcgaacttcacagccatatgacctaatccaccaagaccaaccacaccta 13378967  T
Q  318 catgtaaaccaggcttgttaagtccaaaatatttca 353  Q
     ||| |  ||||| |||| || |||||||| |||||    
T  13378968 tatgcagtccaggtttgtcaaatccaaaatgtttca 13379003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 346
Target Start/End: Original strand, 13412948 - 13413113
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    |||||| ||||||||||||||||| || |||||||| | ||||||||| || || || || || || ||||||||||| ||||||||| |||||||||||    
T  13412948 aaatgaatcagctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcaca 13413047  T
Q  281 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaa 346  Q
    |||||||| || | ||||||||||||||| ||||| | ||||||||||||||| |  |||||||||    
T  13413048 gccatatggccaagtccaccaagaccaacaacacctatatgtaaaccaggcttatcgagtccaaaa 13413113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 13426188 - 13426312
Alignment:
Q  185 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 284  Q
    |||||||||||||| ||||| || |||||||| | |||| |||| || || || || ||||||||||||||||||||||||||| | |||||||||||||    
T  13426188 gagtcagctcctaaatgttctatcgcttccttttctttgctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagcca 13426287  T
Q  285 tatgacctaatccaccaagaccaac 309  Q
    ||||||| | |||||||||||||||    
T  13426288 tatgaccaagtccaccaagaccaac 13426312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 13385633 - 13385469
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    |||||| |||||||||||||||||  | |||||||| | |||| ||| ||| || || || || || ||||||||||||||||||||| |||||||||||    
T  13385633 aaatgaatcagctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcaca 13385534  T
Q  281 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaa 345  Q
    ||||| ||||| |  |||||||||||||| ||||| ||||| | |||||| ||||  ||||||||    
T  13385533 gccatgtgaccaagcccaccaagaccaacaacaccgacatgaagaccaggtttgtcgagtccaaa 13385469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 13389454 - 13389320
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    |||||| || |||||||||||||| || ||||| |||| |||||| || || || || |||||||||||| | |||||||| |||||| |||||||||||    
T  13389454 aaatgaatcggctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcaca 13389355  T
Q  281 gccatatgacctaatccaccaagaccaaccacacc 315  Q
    ||||| ||||| |  |||||||||||||| |||||    
T  13389354 gccatgtgaccaagcccaccaagaccaacaacacc 13389320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 335
Target Start/End: Original strand, 13419297 - 13419447
Alignment:
Q  185 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 284  Q
    ||||||||||| |||||||| || |||||||| | ||||| ||| || || || || || || ||||||||||| ||||||||  |||||||||||||||    
T  13419297 gagtcagctcccaagtgttctattgcttccttttctttgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagcca 13419396  T
Q  285 tatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgt 335  Q
    |||| || | ||||||||||||||| ||||| | ||  | |||||||||||    
T  13419397 tatggccaagtccaccaagaccaacaacacctatattcataccaggcttgt 13419447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 13446848 - 13447010
Alignment:
Q  185 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcacagcca 284  Q
    ||||| |||||||||||||| || |||||||| |  || ||||| || || || || || || || |||||||||||||||||  |||||||||||||||    
T  13446848 gagtctgctcctaagtgttctattgcttccttttcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagcca 13446947  T
Q  285 tatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaat 347  Q
    ||||||| | ||||||||||||||| || || | ||  | |||||||||||  ||||||||||    
T  13446948 tatgaccaagtccaccaagaccaacaactcctatattcataccaggcttgtcgagtccaaaat 13447010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 349
Target Start/End: Complemental strand, 13393861 - 13393693
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    |||||| |||||||||| || ||| || ||||| |||| |||||| || || || || || |||||||||||||| |||||||||||  |||| ||||||    
T  13393861 aaatgaatcagctcctaggttttctattgcttctttctctttgttgggtgatgtactaattactgttacattagctccaaaagcttttgcaaacttcaca 13393762  T
Q  281 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatat 349  Q
     |||  ||||| | ||||||||||||||| | ||| | ||  | |||||||||||  ||||||||||||    
T  13393761 cccaagtgaccaagtccaccaagaccaacaatacctatattcataccaggcttgtcgagtccaaaatat 13393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 13453797 - 13453931
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    ||||||||| |||| ||||||||| |  |||||||| |  || ||||| || || || || || || ||||||||||| ||||||||| | ||||||||     
T  13453797 aaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtcacattagcaccgaaagctttggcgaatttcacg 13453896  T
Q  281 gccatatgacctaatccaccaagaccaaccacacc 315  Q
    |||||||| || | ||||||||||||||| |||||    
T  13453897 gccatatggccaagtccaccaagaccaacaacacc 13453931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 13378630 - 13378693
Alignment:
Q  21 agtgctgaaacagtgtcaataataccatcaagggtgtccattacagcctataacataatgaaca 84  Q
    ||||||||||||||||| || || |||||||  ||  |||||||||||||||||||| ||||||    
T  13378630 agtgctgaaacagtgtcgatgattccatcaaacgttcccattacagcctataacatattgaaca 13378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 149 - 359
Target Start/End: Complemental strand, 28430869 - 28430659
Alignment:
Q  149 acctgcatttggtcttgttcgtggctaaccacaaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgtta 248  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||| |   ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  28430869 acctgcatttgatcttgttcactgctaaccacaaatgagtcagctccaagaagttcaatagcttccttctttttgttaggagaagtgctaatcactgtta 28430770  T
Q  249 cattagcaccaaaagctttgccaaatttcacagccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaata 348  Q
    | |||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |  || ||   ||| || | ||||||||||||    
T  28430769 ccttagcaccaaaagctttggcaaatttcacagccatatgaccaagtccaccaagaccaaccacacctaattgcaagttaggtttatcaagtccaaaata 28430670  T
Q  349 tttcaaagggc 359  Q
    |||||||||||    
T  28430669 tttcaaagggc 28430659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 349
Target Start/End: Original strand, 47601115 - 47601283
Alignment:
Q  181 aaatgagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttgccaaatttcaca 280  Q
    |||||||||||||||||||  |||  | ||||| || | ||||||||| || || || || || || |||||||| |||||||||||  |||| || |||    
T  47601115 aaatgagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaaca 47601214  T
Q  281 gccatatgacctaatccaccaagaccaaccacacccacatgtaaaccaggcttgttaagtccaaaatat 349  Q
    ||||| ||||| | ||||||||||||||| ||||| | ||| | |||||| || |  ||||||||||||    
T  47601215 gccatgtgaccaagtccaccaagaccaacaacacctatatgcataccaggtttatcgagtccaaaatat 47601283  T

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