View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_3 (Length: 610)
Name: NF1523_low_3
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 302 - 594
Target Start/End: Original strand, 2571685 - 2571977
Alignment:
| Q |
302 |
gccgcgtgcaaaacgacattgtatccgaaactatgtcgctcgatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattctcca |
401 |
Q |
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| T |
2571685 |
gccgcgtgcaaaacgacattgtatccgaaactatgtcgctcaatgctatccgcaattcgttcatcaccatcagatccatataactatggaaaattctcca |
2571784 |
T |
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| Q |
402 |
taaagcaaaacttaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagttgg |
501 |
Q |
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| T |
2571785 |
taaagcaaaacctaaaagtagcaagaaaactagaaaaagtgttcatagatttcctcaatcgccaccaatcatcttcatcattaaaccatgaagaagttgg |
2571884 |
T |
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| Q |
502 |
tgcactagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgatgaactaaaatcagctacttcttcttcttc |
594 |
Q |
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| T |
2571885 |
tgcattagttgattgcaaagaccttaactcactaaatgtagattacttagaatccatttctgatgaactaaaatcagctagttcttcttcttc |
2571977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 2571450 - 2571608
Alignment:
| Q |
67 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
166 |
Q |
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| T |
2571450 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
2571549 |
T |
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| Q |
167 |
cacctttcattatacttccnnnnnnncatgtcaccttcactttcccttctccttttcat |
225 |
Q |
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| T |
2571550 |
cacctttcattaaacttccaaaaaaacatgtcaccttcactttcccttctccttttcat |
2571608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2571194 - 2571256
Alignment:
| Q |
1 |
aaaaattaataacacattgaagagtgacaatgttattttccaaataaactatttagagatagg |
63 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2571194 |
aaaaattaataacacattgaagactgacaatgttatttttcaaataaactatttagagatagg |
2571256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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