View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_30 (Length: 346)
Name: NF1523_low_30
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 8134598 - 8134268
Alignment:
| Q |
13 |
cagacatatattcaatcagaaatctcggtactaaatatggtcaacaaacaagctacaggtgtgtgacttaacatgatttgcaccatcgcaggttgctaca |
112 |
Q |
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| T |
8134598 |
cagacatatattcaatcagaaatctcggtaataaatatggtcaacaaacaagctacaggtgtgtgacttaacatgatttgcaccatcgcaggttgctaca |
8134499 |
T |
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| Q |
113 |
tgaacttggacggttacaaccacaagacaaagatgcggaaa------------cacacttatgataaaattacgaggtttaatagcagcctaattaagcc |
200 |
Q |
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| T |
8134498 |
tgaacttggacggttacaaccacgagacaaagatgcggcaatcaagcggataacacacttatgatacaattacgaggtttaacagcagcctaattaagcc |
8134399 |
T |
|
| Q |
201 |
ttaacatcgacctttttaagttaaatgttccccaaaattaacatttttcttagacattaccgtgaattgaaggcaccaaca-aacgatcaatttataata |
299 |
Q |
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|||||||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8134398 |
ttaacatcaactttttcaagttaa-tgttccccaaaattaacatttttcttagacattaccgtgaattgaaggcaccaacacaacgatcaatttataata |
8134300 |
T |
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| Q |
300 |
aaacacaacacacaacagtacgtccaagaatt |
331 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8134299 |
aaacacaacacacaacagtacgtccaagaatt |
8134268 |
T |
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