View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_31 (Length: 340)
Name: NF1523_low_31
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 127342 - 127668
Alignment:
| Q |
1 |
gaggtttaaattccaccaaccacttaattgaatttccatttccataacaattatgaacagagaagttgcaatctatttgattgaatggacgttaacggac |
100 |
Q |
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| T |
127342 |
gaggtttaaatttcaccaaccacttaattaaatttccatttctataactactatgaacagagaagttgcaatctatttgattgaatgaacgttaaaggac |
127441 |
T |
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| Q |
101 |
tttcgacttggattggtttggtaccaccatccaaaattcgattataatcatgtgtt------tgttaaatgatggaaattgatttgctgaaacataatgg |
194 |
Q |
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| T |
127442 |
tttcgacttggattggtttggtaccaccatccaaaattcgattataatcatgtgttattgtttgttaaatgatggaaattgatttgctgaaacataaggg |
127541 |
T |
|
| Q |
195 |
ttacttattttgtcaacctagaaaagaaaaccacacactagatctgcatctactcaagttggagatgatatgcgtggaaaaatagttggagatgatagag |
294 |
Q |
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| T |
127542 |
ttacttattttgtcaaccc-gaaaacaaaaccacacactagttctgcatctactcaagttggagatgatatgcgtggaaaaatagttggagaggatagag |
127640 |
T |
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| Q |
295 |
gtataaacataattgtgtgtggaaaaag |
322 |
Q |
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| T |
127641 |
atatggacataattgtgtgtggaaaaag |
127668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 46491431 - 46491162
Alignment:
| Q |
1 |
gaggtttaaattccaccaaccacttaattgaatttccatttccataacaattatgaacagagaagttgcaatctatttgattgaatggacgttaacggac |
100 |
Q |
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| T |
46491431 |
gaggtttaaattccaccaaccacttaattaaatttccatttccataacaactatgaacatagaagttgcaatctatttgattgaatgaacgttaacggac |
46491332 |
T |
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| Q |
101 |
tttcgacttggattggtttggtaccaccatccaaaattcgattataatcatg------tgtttgttaaatgatggaaattgatttgctgaaacataatgg |
194 |
Q |
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| T |
46491331 |
tttcgacttggattggtttggtaccagcatccaaaattcaattataatcatgtgttattgtttgttaaatgatggaaattgatttgttgaaacataatgg |
46491232 |
T |
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| Q |
195 |
ttacttattttgtcaacctagaaaagaaaaccacacactagatctgcatctactcaagttggagatgata |
264 |
Q |
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| T |
46491231 |
ttacttattttgtcaacctagaaaacaaaaccacacactagatccgcatctactcaagttggagaggata |
46491162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 46491175 - 46491131
Alignment:
| Q |
278 |
agttggagatgatagaggtataaacataattgtgtgtggaaaaag |
322 |
Q |
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| T |
46491175 |
agttggagaggatagaggtatggacataattgtgtgtggaaaaag |
46491131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 2028666 - 2028980
Alignment:
| Q |
4 |
gtttaaattccaccaaccacttaattgaatttccatttccataacaattatgaacagagaagttgcaatctatttgattgaatggacgttaacggacttt |
103 |
Q |
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|||||| || || ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
2028666 |
gtttaactttcatcaaccgcttaattaaatttccatttccgtaacaattatgaacagagaagttgcaatctatttgattgaatgaacattaacgggcttt |
2028765 |
T |
|
| Q |
104 |
cgacttggattggtttggtaccaccatccaaaattcgattataatcatg------tgtttgttaaatgatggaaattgatttgctgaaacataatggtta |
197 |
Q |
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| T |
2028766 |
cgacttggattggtttggtaccaccatccgaaattcgattataatcatgtgttattgtttgttaaatgatggaaattgatttgctgaaacataatggtta |
2028865 |
T |
|
| Q |
198 |
cttattttgtcaacctagaaaagaaaaccacacactagatctgcatctactcaagttggagatgatatgcgtggaaaaatagttggagatgatagaggta |
297 |
Q |
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| T |
2028866 |
cttattttgtcaacccagaaaacaaaacc---------atctgcatcttctcaag-tggagatgatatgcgcggaaaaatagttggaaaggatagagata |
2028955 |
T |
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| Q |
298 |
taaacataattgtgtgtggaaaaag |
322 |
Q |
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| T |
2028956 |
tggacataattgtgtgtgtaaaaag |
2028980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 6255625 - 6255673
Alignment:
| Q |
234 |
agatctgcatctactcaagttggagatgatatgcgtggaaaaatagttg |
282 |
Q |
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| T |
6255625 |
agatctgcatcttctcaagttgcagaggacatgcgtggaaaaaaagttg |
6255673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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