View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_32 (Length: 340)
Name: NF1523_low_32
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 34973292 - 34972967
Alignment:
| Q |
1 |
ataacaaaaactcaattagaatatgattatccttgatattcttaaatacaaagtggttttgtcaaccaaaaataagaatgatcctcctaccaaatcggcg |
100 |
Q |
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| T |
34973292 |
ataacaaaaactcaattagaatatgattatccttgatattcttagatacaaagtggttttgtcaaccaaaaataagaatgatcctcctaccaaatcggcg |
34973193 |
T |
|
| Q |
101 |
tcttttgcagcagcagccaattccgagctgacctgtcttaagtctatgcatggactaccacacccattctcaacaaccatcaaggggaccgaagatgaat |
200 |
Q |
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| T |
34973192 |
tcttttgcagcagcagccaattccgagctgacctgtcttaagtctatgcatggactaccacacccattctcaacaaccatcaaggggaccgaagatgaat |
34973093 |
T |
|
| Q |
201 |
tttcttttgagctacctgtattaatcattgcatcgacaagcaagcctccagcttcagcagctcgccttagaatgtcacaatgctataaacaaaaagatta |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34973092 |
tttcttttgagctatctgtattaatcattgcatcgacaagcaagcctccagcttcagcagctcgccttagaatgtcacaatgctataaacaaaaagatta |
34972993 |
T |
|
| Q |
301 |
gtttcactgaaggattatattatatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
34972992 |
gtttcactgaaggattatattatatg |
34972967 |
T |
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