View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_35 (Length: 311)
Name: NF1523_low_35
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 17746833 - 17746524
Alignment:
| Q |
1 |
tttagttcctacatgtctcttcatgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaattattggaagatgcattaaagtaca |
100 |
Q |
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| T |
17746833 |
tttagttcctacatgtctcttcatgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaattattggaagatgcattaaagtaca |
17746734 |
T |
|
| Q |
101 |
atggactattcactagggaaggggttagatccaactgtgaaaagggaaaaagacaatacttttnnnnnnngatgtgactacaaattatacaatcaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
17746733 |
atggactattcactagggaaggggttagatccaattgtgaaaagggaaaaagacaatacttttaaaaaaagatgtgactacatattatacaatcaagtag |
17746634 |
T |
|
| Q |
201 |
attagaacatgttcctctctagtagttatcatccttcctcctggaaggggacaaatcataggcttttcctatataacaatagaaacaaaccatgattaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17746633 |
attagaacatgttcctctctagtagttatcatccttcctcctggaaggggacaaatcataggcttttccaatataacaatagaaacaaaccatgattaat |
17746534 |
T |
|
| Q |
301 |
ataataagca |
310 |
Q |
| |
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|||||||||| |
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| T |
17746533 |
ataataagca |
17746524 |
T |
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