View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_36 (Length: 306)

Name: NF1523_low_36
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_36
NF1523_low_36
[»] chr8 (28 HSPs)
chr8 (124-288)||(24688836-24688992)
chr8 (14-53)||(24688727-24688766)
chr8 (124-184)||(1759440-1759501)
chr8 (14-53)||(27022759-27022798)
chr8 (124-184)||(5918850-5918911)
chr8 (16-53)||(28205537-28205574)
chr8 (16-53)||(33653598-33653635)
chr8 (124-169)||(38804471-38804516)
chr8 (16-52)||(1170605-1170641)
chr8 (128-168)||(8889748-8889788)
chr8 (13-53)||(13469271-13469311)
chr8 (124-183)||(15898979-15899039)
chr8 (137-183)||(10864996-10865043)
chr8 (14-53)||(18279295-18279334)
chr8 (14-53)||(24023224-24023263)
chr8 (14-53)||(33192452-33192491)
chr8 (14-53)||(38500101-38500140)
chr8 (124-166)||(13150159-13150201)
chr8 (14-52)||(30264150-30264188)
chr8 (16-53)||(288884-288921)
chr8 (16-53)||(2691968-2692005)
chr8 (16-53)||(4430139-4430176)
chr8 (16-53)||(5918742-5918779)
chr8 (16-53)||(9503086-9503123)
chr8 (125-188)||(11352971-11353035)
chr8 (14-50)||(11929564-11929600)
chr8 (124-160)||(11938027-11938063)
chr8 (17-53)||(15837422-15837458)
[»] chr7 (19 HSPs)
chr7 (128-184)||(5800465-5800522)
chr7 (136-196)||(3996584-3996646)
chr7 (16-53)||(9412768-9412805)
chr7 (124-184)||(20149271-20149332)
chr7 (16-53)||(25834698-25834735)
chr7 (124-168)||(15646946-15646990)
chr7 (14-53)||(1787059-1787098)
chr7 (124-181)||(1787168-1787226)
chr7 (136-186)||(20055860-20055909)
chr7 (127-169)||(21635062-21635104)
chr7 (124-166)||(39435184-39435226)
chr7 (16-53)||(8790907-8790944)
chr7 (128-169)||(10199465-10199506)
chr7 (120-161)||(16847862-16847903)
chr7 (16-53)||(23896766-23896803)
chr7 (136-184)||(34729409-34729458)
chr7 (14-46)||(7628772-7628804)
chr7 (14-53)||(23050968-23051008)
chr7 (124-156)||(46759430-46759462)
[»] chr1 (16 HSPs)
chr1 (128-184)||(1580998-1581055)
chr1 (124-184)||(27307596-27307656)
chr1 (127-185)||(650118-650177)
chr1 (124-186)||(34749035-34749097)
chr1 (16-53)||(8574121-8574158)
chr1 (138-183)||(37029257-37029302)
chr1 (16-53)||(39728329-39728366)
chr1 (124-183)||(33194106-33194166)
chr1 (14-53)||(7491225-7491264)
chr1 (14-53)||(16143379-16143418)
chr1 (16-49)||(11345044-11345077)
chr1 (124-169)||(44648447-44648492)
chr1 (182-210)||(7399195-7399223)
chr1 (124-156)||(15470679-15470711)
chr1 (17-53)||(28071544-28071580)
chr1 (16-52)||(34969276-34969312)
[»] chr3 (28 HSPs)
chr3 (14-53)||(611912-611951)
chr3 (125-184)||(18874533-18874592)
chr3 (16-53)||(50483538-50483575)
chr3 (124-160)||(19245542-19245578)
chr3 (125-181)||(22004652-22004708)
chr3 (125-181)||(22012169-22012225)
chr3 (124-160)||(35379577-35379613)
chr3 (14-53)||(7777666-7777705)
chr3 (130-169)||(14266010-14266049)
chr3 (136-183)||(14771075-14771122)
chr3 (14-53)||(18732676-18732715)
chr3 (14-53)||(25842443-25842482)
chr3 (14-53)||(27365936-27365975)
chr3 (124-162)||(3895114-3895152)
chr3 (124-165)||(13043131-13043172)
chr3 (124-165)||(13051208-13051249)
chr3 (16-53)||(21078745-21078782)
chr3 (16-53)||(35379965-35380002)
chr3 (16-53)||(45644227-45644264)
chr3 (14-51)||(45701853-45701890)
chr3 (124-156)||(265176-265208)
chr3 (13-53)||(13875597-13875637)
chr3 (16-52)||(22258229-22258265)
chr3 (124-160)||(25478950-25478986)
chr3 (16-52)||(26130880-26130916)
chr3 (17-53)||(33091538-33091574)
chr3 (124-183)||(38176950-38177010)
chr3 (124-156)||(42896636-42896668)
[»] chr2 (11 HSPs)
chr2 (125-164)||(14706475-14706514)
chr2 (15-53)||(24005024-24005062)
chr2 (124-185)||(36802600-36802662)
chr2 (128-183)||(33133802-33133858)
chr2 (16-51)||(30976930-30976965)
chr2 (14-53)||(40499262-40499301)
chr2 (14-53)||(44019973-44020012)
chr2 (19-53)||(7536653-7536687)
chr2 (16-53)||(42949837-42949874)
chr2 (128-183)||(13450369-13450425)
chr2 (16-52)||(24791828-24791864)
[»] scaffold0003 (1 HSPs)
scaffold0003 (136-185)||(227485-227535)
[»] chr6 (9 HSPs)
chr6 (16-53)||(31203966-31204003)
chr6 (136-183)||(19145962-19146010)
chr6 (16-51)||(7205145-7205180)
chr6 (16-53)||(7771725-7771762)
chr6 (16-53)||(26252877-26252914)
chr6 (16-53)||(26538470-26538507)
chr6 (124-169)||(28711804-28711849)
chr6 (124-183)||(24062823-24062883)
chr6 (13-53)||(32531228-32531268)
[»] chr5 (14 HSPs)
chr5 (124-184)||(31659600-31659661)
chr5 (14-53)||(28867516-28867555)
chr5 (14-53)||(42027572-42027611)
chr5 (16-53)||(14000571-14000609)
chr5 (124-184)||(936337-936398)
chr5 (16-53)||(7938054-7938091)
chr5 (127-183)||(11487005-11487062)
chr5 (127-160)||(12981819-12981852)
chr5 (136-169)||(16610541-16610574)
chr5 (136-169)||(28766514-28766547)
chr5 (20-52)||(4326273-4326305)
chr5 (124-160)||(16313465-16313501)
chr5 (136-183)||(19018862-19018910)
chr5 (127-167)||(39585274-39585314)
[»] chr4 (21 HSPs)
chr4 (124-169)||(10128633-10128678)
chr4 (124-169)||(20702736-20702781)
chr4 (136-181)||(32006335-32006380)
chr4 (124-183)||(17702365-17702425)
chr4 (16-51)||(21122328-21122363)
chr4 (136-189)||(2133770-2133824)
chr4 (127-183)||(5190647-5190704)
chr4 (16-53)||(7712701-7712738)
chr4 (14-51)||(17702500-17702537)
chr4 (124-169)||(17702677-17702722)
chr4 (14-51)||(20702462-20702499)
chr4 (136-184)||(23091108-23091157)
chr4 (16-53)||(23091242-23091279)
chr4 (136-184)||(23775345-23775394)
chr4 (16-53)||(26878547-26878584)
chr4 (14-51)||(35104008-35104045)
chr4 (16-53)||(35595532-35595569)
chr4 (14-51)||(51400057-51400094)
chr4 (16-53)||(56085027-56085064)
chr4 (16-52)||(12214497-12214533)
chr4 (136-183)||(35519296-35519344)
[»] scaffold0445 (1 HSPs)
scaffold0445 (14-53)||(4933-4972)
[»] scaffold0193 (1 HSPs)
scaffold0193 (14-53)||(21442-21481)
[»] scaffold0649 (1 HSPs)
scaffold0649 (124-162)||(8249-8287)
[»] scaffold0293 (1 HSPs)
scaffold0293 (136-169)||(4707-4740)
[»] scaffold0268 (1 HSPs)
scaffold0268 (128-169)||(21425-21466)
[»] scaffold0092 (1 HSPs)
scaffold0092 (124-184)||(24111-24172)
[»] scaffold1379 (1 HSPs)
scaffold1379 (21-53)||(1598-1630)
[»] scaffold0330 (1 HSPs)
scaffold0330 (124-156)||(18696-18728)
[»] scaffold0240 (1 HSPs)
scaffold0240 (124-156)||(2714-2746)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 24688836 - 24688992
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgccgtgttttcgctagtaaataaataaataaataaacaaacaaacaagcctttcaca 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||    ||||||||||||||||||||    
T  24688836 aacgttagcgcgataaaaagagcggaaagccggacacatgagtgccgtgttttcgctagtaaa----taaataaat----aaacaaacaagcctttcaca 24688927  T
Q  224 tcttagtgtgaatacatcacaatatacataactgatcctaactagattagcataaaacacgtaac 288  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24688928 tcttagtgtgaatgcatcataatatacataactgatcctaactagattagcataaaacacgtaac 24688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 24688727 - 24688766
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24688727 aaataatcatggttattttggtttgttataacttgaaagc 24688766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 1759501 - 1759440
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||||||| |||||||||||||| |||||||||| |||||| |||| ||||||||||||    
T  1759501 aacgttagcgcaataaaaagagcggagagacggacacttgagtgaccgtcttttcgctagta 1759440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 27022798 - 27022759
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  27022798 aaataatcatgattattttggtttgttataacttgaaagc 27022759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 5918850 - 5918911
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||||||| ||||||||||||||||||||  ||| |||||| |||| ||||||||||||    
T  5918850 aacgttagcgcaataaaaagagcggaaagacgagcacgtgagtgtccgtcttttcgctagta 5918911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 28205537 - 28205574
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28205537 ataatcatggttaatttggtttgttataacttgaaagc 28205574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 33653635 - 33653598
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  33653635 ataatcatggttaatttggtttgttataacttgaaagc 33653598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 38804516 - 38804471
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  38804516 aacgttagcgcaataaaaagagcggaaagacgggcacatgaatgcc 38804471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 1170605 - 1170641
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1170605 ataatcatggttagtttggtttgttataacttgaaag 1170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 8889748 - 8889788
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtgc 168  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  8889748 ttagcgcaataaaaagagcggaaagacggacacgtgagtgc 8889788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13469271 - 13469311
Alignment:
Q  13 aaaataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  13469271 aaaataatcatgattagtttggtttgttataacttgaaagc 13469311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 15898979 - 15899039
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    |||||||| || | ||||||||||||||||||||||| |||||| |||| |||||||||||    
T  15898979 aacgttagtgcaacaaaaagagcggaaagacggacacgtgagtgcccgtcttttcgctagt 15899039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 10865043 - 10864996
Alignment:
Q  137 taaaaagagcggaaagacggacacatgagtgcc-gtgttttcgctagt 183  Q
    |||||||||||||||||||| |||||||||||| || |||||||||||    
T  10865043 taaaaagagcggaaagacgggcacatgagtgccggtcttttcgctagt 10864996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18279334 - 18279295
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  18279334 aaataatcatgattagtttggtttgttataacttgaaagc 18279295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 24023263 - 24023224
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  24023263 aaataatcatgattagtttggtttgttataacttgaaagc 24023224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 33192491 - 33192452
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  33192491 aaataatcatgattagtttggtttgttataacttgaaagc 33192452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 38500101 - 38500140
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  38500101 aaataatcatggtttgtttggtttgttataacttgaaagc 38500140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 13150159 - 13150201
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagt 166  Q
    ||||||| ||| ||||||||||||||||||||||||| |||||    
T  13150159 aacgttaacgcaataaaaagagcggaaagacggacacgtgagt 13150201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 30264188 - 30264150
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  30264188 aaataatcatggttagtttgatttgttataacttgaaag 30264150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 288884 - 288921
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  288884 ataatcatagttaatttggtttgttataacttgaaagc 288921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 2692005 - 2691968
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  2692005 ataatcatggttcgtttggtttgttataacttgaaagc 2691968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 4430176 - 4430139
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  4430176 ataatcatggttagtttgatttgttataacttgaaagc 4430139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 5918742 - 5918779
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  5918742 ataatcatgattattttggtttgttataactagaaagc 5918779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9503086 - 9503123
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  9503086 ataatcatggttaatttggtttgttataatttgaaagc 9503123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 11352971 - 11353035
Alignment:
Q  125 acgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagtaaata 188  Q
    |||||||||| ||||||||||||||||||| | ||| |||||| |||| ||||| ||||| ||||    
T  11352971 acgttagcgcaataaaaagagcggaaagacaggcacgtgagtgtccgtcttttcactagttaata 11353035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 11929600 - 11929564
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaa 50  Q
    |||||| |||||||||||||||||||||||| |||||    
T  11929600 aaataaacatggttattttggtttgttataatttgaa 11929564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 11938027 - 11938063
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacac 160  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  11938027 aacgttagcgcaataaaaagagcgaaaagacggacac 11938063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 15837458 - 15837422
Alignment:
Q  17 taatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  15837458 taatcatgattagtttggtttgttataacttgaaagc 15837422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 5800465 - 5800522
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  5800465 ttagcgcaataaaaagagcggaaagacggacacgtgagtgtccgtcttttcgctagta 5800522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 3996646 - 3996584
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagtaaata-aataaata 196  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||| ||||||||    
T  3996646 ataaaaagagcggaaagacggacacgtgagtgctcgtcttttcgctagtatatataataaata 3996584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 9412768 - 9412805
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  9412768 ataatcatggttaatttggtttgttataacttgaaagc 9412805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 20149332 - 20149271
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    |||||||| ||||||||||||| ||||||||||  ||||||||| |||| ||||||||||||    
T  20149332 aacgttagtgcgataaaaagagtggaaagacgggtacatgagtgtccgtcttttcgctagta 20149271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 25834698 - 25834735
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25834698 ataatcatggttagtttggtttgttataacttgaaagc 25834735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 15646990 - 15646946
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgc 168  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||    
T  15646990 aacgttagcgcaataaaaagagcggaaagacgggcacgtgagtgc 15646946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 1787059 - 1787098
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  1787059 aaataatcatggttagtttgatttgttataacttgaaagc 1787098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 1787168 - 1787226
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgcta 181  Q
    ||||||| ||| || |||||||||||||||||||||| |||||| |||| |||||||||    
T  1787168 aacgttaacgcaattaaaagagcggaaagacggacacgtgagtgtccgtcttttcgcta 1787226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 20055860 - 20055909
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgccgtgttttcgctagtaaa 186  Q
    ||||||||| || |||||||||||| |||||||| ||||||||||||||||    
T  20055860 ataaaaagaacgcaaagacggacacgtgagtgcc-tgttttcgctagtaaa 20055909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 21635062 - 21635104
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    |||||||| ||||||||||||||||||||  ||||||||||||    
T  21635062 gttagcgcaataaaaagagcggaaagacgagcacatgagtgcc 21635104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 39435184 - 39435226
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagt 166  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||    
T  39435184 aacgttagcgcaataaaaagagcggaaagacgggcacgtgagt 39435226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8790907 - 8790944
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  8790907 ataatcatggttagtttgatttgttataacttgaaagc 8790944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 10199506 - 10199465
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||    
T  10199506 ttagcgcaataaaaagagcggaaagacgggcacatgaatgcc 10199465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 16847862 - 16847903
Alignment:
Q  120 ttctaacgttagcgcgataaaaagagcggaaagacggacaca 161  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  16847862 ttctaacgttagcgcaatctaaagagcggaaagacggacaca 16847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 23896766 - 23896803
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  23896766 ataaccatgattattttggtttgttataacttgaaagc 23896803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 34729409 - 34729458
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    |||||||| |||||||||||||||| |||||| |||| ||||||||||||    
T  34729409 ataaaaagtgcggaaagacggacacgtgagtgcccgtcttttcgctagta 34729458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 7628772 - 7628804
Alignment:
Q  14 aaataatcatggttattttggtttgttataact 46  Q
    ||||||||||||||| |||||||||||||||||    
T  7628772 aaataatcatggttagtttggtttgttataact 7628804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 23050968 - 23051008
Alignment:
Q  14 aaataatcatggtta-ttttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  23050968 aaataatcatgattagttttggtttgttataacttgaaagc 23051008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 46759462 - 46759430
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  46759462 aacgttagcgcaataaaaagagcggaaagacgg 46759430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 1581055 - 1580998
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  1581055 ttagcgcaataaaaagagcggaaagacggacacctgagtgtccgtcttttcgctagta 1580998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 27307656 - 27307596
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  27307656 aacgttagcgcaataaaaagagcggaaagacgg-cacatgagtgtctgtgttttcgctagta 27307596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 650177 - 650118
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagtaa 185  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||| ||| |||||||||    
T  650177 gttagcgcaataaaaagagcggaaagacgggcacatgagtgcccgtctttgcgctagtaa 650118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 34749035 - 34749097
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgccgtgttttcgctagtaaa 186  Q
    ||||||||||| |||||||||| |||||||||| ||  |||||||||| ||||| ||||||||    
T  34749035 aacgttagcgcaataaaaagagtggaaagacgggcatgtgagtgccgtcttttcactagtaaa 34749097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8574121 - 8574158
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8574121 ataatcatggttagtttggtttgttataacttgaaagc 8574158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 37029302 - 37029257
Alignment:
Q  138 aaaaagagcggaaagacggacacatgagtgccgtgttttcgctagt 183  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||    
T  37029302 aaaaagagcggaaagacgaacacctgagtgccgtcttttcgctagt 37029257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39728329 - 39728366
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39728329 ataaccatggttattttggtttgttataacttgaaagc 39728366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 33194106 - 33194166
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc-gtgttttcgctagt 183  Q
    ||||||| ||| |||||||||||||||||| |||||| |||||||| || |||||||||||    
T  33194106 aacgttaacgcaataaaaagagcggaaagaaggacacgtgagtgcctgtattttcgctagt 33194166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 7491264 - 7491225
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  7491264 aaataatcatggttagtttggtttgttataatttgaaagc 7491225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 16143418 - 16143379
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  16143418 aaataatcatggttattttgattttttataacttgaaagc 16143379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 11345044 - 11345077
Alignment:
Q  16 ataatcatggttattttggtttgttataacttga 49  Q
    ||||||||||||| ||||||||||||||||||||    
T  11345044 ataatcatggttagtttggtttgttataacttga 11345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 44648447 - 44648492
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||| | ||||||||||||||||||||||||  ||||||||    
T  44648447 aacgttagcacaataaaaagagcggaaagacggacatgtgagtgcc 44648492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 7399223 - 7399195
Alignment:
Q  182 gtaaataaataaataaataaacaaacaaa 210  Q
    |||||||||||||||||||||||||||||    
T  7399223 gtaaataaataaataaataaacaaacaaa 7399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 15470679 - 15470711
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  15470679 aacgttagcgcaataaaaagagcggaaagacgg 15470711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 28071580 - 28071544
Alignment:
Q  17 taatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28071580 taatcatgattactttggtttgttataacttgaaagc 28071544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 34969312 - 34969276
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  34969312 ataatgatggttagtttggtttgttataacttgaaag 34969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 611912 - 611951
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  611912 aaataatcatgattattttggtttgttataacttgaaagc 611951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 18874592 - 18874533
Alignment:
Q  125 acgttagcgcgataaaaagagcggaaagacggacacatgagtgccgtgttttcgctagta 184  Q
    ||||||| || |||||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  18874592 acgttagagcaataaaaagagtggaaagacagacacataagtgccgtcttttcgctagta 18874533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 50483575 - 50483538
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  50483575 ataatcatggttagtttggtttgttataacttgaaagc 50483538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 19245542 - 19245578
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacac 160  Q
    ||||||||||| |||||||||||||||||||||||||    
T  19245542 aacgttagcgcaataaaaagagcggaaagacggacac 19245578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 22004652 - 22004708
Alignment:
Q  125 acgttagcgcgataaaaagagcggaaagacggacacatgagtgccgtgttttcgcta 181  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  22004652 acgttagcgcaataaaaagagcggaaagacgggcacgtgagtgctggcttttcgcta 22004708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 22012169 - 22012225
Alignment:
Q  125 acgttagcgcgataaaaagagcggaaagacggacacatgagtgccgtgttttcgcta 181  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  22012169 acgttagcgcaataaaaagagcggaaagacgggcacgtgagtgctggcttttcgcta 22012225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 35379577 - 35379613
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacac 160  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35379577 aacgttagcgcaataaaaagagcggaaagacggacac 35379613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 7777666 - 7777705
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  7777666 aaataatcatgattagtttggtttgttataacttgaaagc 7777705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 14266010 - 14266049
Alignment:
Q  130 agcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  14266010 agcgcaataaaaagagcggaaagacggacacgtgagtgcc 14266049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 14771122 - 14771075
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgccgtgttttcgctagt 183  Q
    |||||||||||||||||||||  || |||||||||| |||||||||||    
T  14771122 ataaaaagagcggaaagacgggtacgtgagtgccgtcttttcgctagt 14771075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 18732676 - 18732715
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  18732676 aaataatcatgattagtttggtttgttataacttgaaagc 18732715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 25842443 - 25842482
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  25842443 aaataatcatggttagtttcgtttgttataacttgaaagc 25842482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 27365975 - 27365936
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  27365975 aaataatcatgattagtttggtttgttataacttgaaagc 27365936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 3895114 - 3895152
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacat 162  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  3895114 aacgttagcgcaataaaaagagcgaaaagacggacacat 3895152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 13043172 - 13043131
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgag 165  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  13043172 aacgttagcgcaataaaaagagcggaaagacgaacacgtgag 13043131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 13051249 - 13051208
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgag 165  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  13051249 aacgttagcgcaataaaaagagcggaaagacgaacacgtgag 13051208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 21078745 - 21078782
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  21078745 ataatcatgattagtttggtttgttataacttgaaagc 21078782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 35379965 - 35380002
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  35379965 ataatcaaggttagtttggtttgttataacttgaaagc 35380002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 45644227 - 45644264
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||| || ||||||||||||||||||||||||    
T  45644227 ataatcatggatagtttggtttgttataacttgaaagc 45644264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 45701890 - 45701853
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  45701890 aaataatcatgattagtttggtttgttataacttgaaa 45701853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 265176 - 265208
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  265176 aacgttagcgcaataaaaagagcggaaagacgg 265208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13875597 - 13875637
Alignment:
Q  13 aaaataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  13875597 aaaataatcatgattaatttggtttgttataatttgaaagc 13875637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 22258229 - 22258265
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    |||||||| |||| |||||||||||||||||||||||    
T  22258229 ataatcatagttagtttggtttgttataacttgaaag 22258265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 25478986 - 25478950
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacac 160  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  25478986 aacgtcagcgcaataaaaagagcggaaagacggacac 25478950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 26130880 - 26130916
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  26130880 ataatcatggttagtttgatttgttataacttgaaag 26130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 33091538 - 33091574
Alignment:
Q  17 taatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  33091538 taatcatggttagtttggtttgttattacttgaaagc 33091574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 38177010 - 38176950
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc-gtgttttcgctagt 183  Q
    ||||||| ||| ||||||| ||||||||||| ||||| |||||||| || |||||||||||    
T  38177010 aacgttatcgcaataaaaatagcggaaagacagacacgtgagtgcctgtcttttcgctagt 38176950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 42896668 - 42896636
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  42896668 aacgttagcgcaataaaaagagcggaaagacgg 42896636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 14706475 - 14706514
Alignment:
Q  125 acgttagcgcgataaaaagagcggaaagacggacacatga 164  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14706475 acgttagcgcaataaaaagagcggaaagacggacacatga 14706514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 24005062 - 24005024
Alignment:
Q  15 aataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24005062 aataatcatggttagtttggtttgttataacttgaaagc 24005024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 36802600 - 36802662
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagtaa 185  Q
    ||||||||||  |||||||||||||||||||||||||  |||||| ||| |||||||||||||    
T  36802600 aacgttagcgtaataaaaagagcggaaagacggacacgcgagtgctcgtcttttcgctagtaa 36802662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 33133858 - 33133802
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagt 183  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| ||| |||||||||||    
T  33133858 ttagcgcaataaaaagagcggaaagacgggcacgtgagtgctcgtcttttcgctagt 33133802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 30976965 - 30976930
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30976965 ataatcatggttattttagtttgttataacttgaaa 30976930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 40499301 - 40499262
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  40499301 aaataatcatgattattttagtttgttataacttgaaagc 40499262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 44020012 - 44019973
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  44020012 aaataatcatggttagattggtttgttataacttgaaagc 44019973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 7536687 - 7536653
Alignment:
Q  19 atcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  7536687 atcatggttagtttggtttgttataacttgaaagc 7536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42949837 - 42949874
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  42949837 ataatcatggtaaatttggtttgttataacttgaaagc 42949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 13450369 - 13450425
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagt-gccgtgttttcgctagt 183  Q
    ||||||| ||||||||||||||||||||| ||| |||||  |||| |||||||||||    
T  13450369 ttagcgcaataaaaagagcggaaagacgggcacgtgagtacccgtcttttcgctagt 13450425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 24791864 - 24791828
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  24791864 ataatcatggttagtttggtttgttataatttgaaag 24791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 227485 - 227535
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagtaa 185  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  227485 ataaaaagagcggaaagacggacacgtgagtgctcgtcttttcgctagtaa 227535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 31204003 - 31203966
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31204003 ataatcatggttagtttggtttgttataacttgaaagc 31203966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 19146010 - 19145962
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  19146010 ataaaaagagcggaaagacggacacgtaagtgcccgtgttttcgctagt 19145962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 7205180 - 7205145
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7205180 ataatcatggttagtttggtttgttataacttgaaa 7205145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7771762 - 7771725
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  7771762 ataatcatggttagtttggtttgttataatttgaaagc 7771725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 26252914 - 26252877
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  26252914 ataatcatggttagtttgatttgttataacttgaaagc 26252877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 26538470 - 26538507
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  26538470 ataatcatggttagtttgatttgttataacttgaaagc 26538507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 28711849 - 28711804
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||| ||| |||||| |||||||||||||| ||||||||    
T  28711849 aacgttagcgcaatacaaagagtggaaagacggacacgtgagtgcc 28711804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 24062823 - 24062883
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    ||||| ||||| |||||||||||||||| |||| ||| |||||| |||| |||||||||||    
T  24062823 aacgtcagcgcaataaaaagagcggaaaaacgggcacgtgagtgcccgtcttttcgctagt 24062883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32531228 - 32531268
Alignment:
Q  13 aaaataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  32531228 aaaataatgatgattagtttggtttgttataacttgaaagc 32531268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 31659600 - 31659661
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||||||| ||||||||| |||||||||| |||| |||||| |||| ||||||||||||    
T  31659600 aacgttagcgcaataaaaagaacggaaagacgaacacgtgagtgcccgtcttttcgctagta 31659661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 28867555 - 28867516
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  28867555 aaataatcatgattaatttggtttgttataacttgaaagc 28867516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 42027611 - 42027572
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  42027611 aaataatcatgattagtttggtttgttataacttgaaagc 42027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 14000571 - 14000609
Alignment:
Q  16 ataatcatgg-ttattttggtttgttataacttgaaagc 53  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  14000571 ataatcatgggttattttggtttgttataacttgaaagc 14000609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 936337 - 936398
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagt-gccgtgttttcgctagta 184  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| | ||| | ||||||||||||    
T  936337 aacgttagcgcaataaaaagagcggaaagacgggcacgtgaatagccatattttcgctagta 936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 7938091 - 7938054
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  7938091 ataatcatggttagtttagtttgttataacttgaaagc 7938054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 11487062 - 11487005
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    |||||||| ||||||||||||||||||||  ||||||| || |||| |||||||||||    
T  11487062 gttagcgcaataaaaagagcggaaagacgtgcacatgaatgtccgtcttttcgctagt 11487005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 12981819 - 12981852
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacac 160  Q
    |||||||| |||||||||||||||||||||||||    
T  12981819 gttagcgcaataaaaagagcggaaagacggacac 12981852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 16610574 - 16610541
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  16610574 ataaaaagagcggaaagacggacacgtgagtgcc 16610541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 28766514 - 28766547
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||||||||||||| ||||||||||||    
T  28766514 ataaaaagagcggaaagacgggcacatgagtgcc 28766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 4326305 - 4326273
Alignment:
Q  20 tcatggttattttggtttgttataacttgaaag 52  Q
    ||||||||| |||||||||||||||||||||||    
T  4326305 tcatggttagtttggtttgttataacttgaaag 4326273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 16313465 - 16313501
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacac 160  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  16313465 aacgttagcgcaataaaaagagcgaaaagacggacac 16313501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 19018862 - 19018910
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    ||||||||||||||||||||| ||||| ||||  |||||||||||||||    
T  19018862 ataaaaagagcggaaagacgggcacataagtgttcgtgttttcgctagt 19018910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 39585274 - 39585314
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacacatgagtg 167  Q
    |||||||| ||||||| ||| ||||||||||||||||||||    
T  39585274 gttagcgcaataaaaatagcagaaagacggacacatgagtg 39585314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 10128633 - 10128678
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||    
T  10128633 aacgttagcgcaataaaaagagcggaaatacggacacatgggtgcc 10128678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 20702736 - 20702781
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||    
T  20702736 aacgttagcgcaataaaaagagcggaaagacgggcacgtgagtgcc 20702781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 32006380 - 32006335
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgccgtgttttcgcta 181  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||    
T  32006380 ataaaaagagtggaaagacggacacatgagtaccgtcttttcgcta 32006335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 17702425 - 17702365
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    |||||||||||  ||||||||||||||||| || |||||||||| |||| |||||||||||    
T  17702425 aacgttagcgcagtaaaaagagcggaaagaggggcacatgagtgcccgtcttttcgctagt 17702365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 21122328 - 21122363
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21122328 ataatcatggttagtttggtttgttataacttgaaa 21122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 2133770 - 2133824
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagtaaataa 189  Q
    ||||||| |||||||||||||||||||||||| | || ||||||||| |||||||    
T  2133770 ataaaaatagcggaaagacggacacatgagtgtctgtcttttcgctaataaataa 2133824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 5190647 - 5190704
Alignment:
Q  127 gttagcgcgataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    |||||||| ||||||||||||||||||| ||||  |||||| |||| |||||||||||    
T  5190647 gttagcgcaataaaaagagcggaaagacagacaggtgagtgcccgtcttttcgctagt 5190704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 7712701 - 7712738
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  7712701 ataatcatgattagtttggtttgttataacttgaaagc 7712738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 17702537 - 17702500
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  17702537 aaataatcatgattagtttggtttgttataacttgaaa 17702500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 17702677 - 17702722
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||| |||||||||||||||||| | |||| ||||||||    
T  17702677 aacgttagcgcaataaaaagagcggaaagatgaacacgtgagtgcc 17702722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 20702462 - 20702499
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  20702462 aaataatcatgattagtttggtttgttataacttgaaa 20702499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 23091157 - 23091108
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagta 184  Q
    ||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  23091157 ataaaaagagcggaaagacgggcacatgaatgctcgtcttttcgctagta 23091108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 23091279 - 23091242
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  23091279 ataatcatggttagtttgatttgttataacttgaaagc 23091242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 23775394 - 23775345
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagta 184  Q
    ||||||||||||||||||||||||| ||| || |||| ||||||||||||    
T  23775394 ataaaaagagcggaaagacggacacgtgaatgtccgtcttttcgctagta 23775345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 26878584 - 26878547
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  26878584 ataatcatggttagtttggtttgttataatttgaaagc 26878547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 35104045 - 35104008
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaa 51  Q
    |||||||| || ||||||||||||||||||||||||||    
T  35104045 aaataatcgtgattattttggtttgttataacttgaaa 35104008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 35595569 - 35595532
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  35595569 ataatcatgattagtttggtttgttataacttgaaagc 35595532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 51400094 - 51400057
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaa 51  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  51400094 aaataatcatggttagttttgtttgttataacttgaaa 51400057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 56085064 - 56085027
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaagc 53  Q
    |||||||||| || ||||||||||||||||||||||||    
T  56085064 ataatcatggctagtttggtttgttataacttgaaagc 56085027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 12214533 - 12214497
Alignment:
Q  16 ataatcatggttattttggtttgttataacttgaaag 52  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  12214533 ataattatggttagtttggtttgttataacttgaaag 12214497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 35519296 - 35519344
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtg-ccgtgttttcgctagt 183  Q
    ||||||||||||||||||||||||  |||||| |||| |||||||||||    
T  35519296 ataaaaagagcggaaagacggacatgtgagtgcccgtcttttcgctagt 35519344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 4933 - 4972
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  4933 aaataatcatgattagtttggtttgttataacttgaaagc 4972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 21481 - 21442
Alignment:
Q  14 aaataatcatggttattttggtttgttataacttgaaagc 53  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  21481 aaataatcatggttagtttgatttgttataacttgaaagc 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 8287 - 8249
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacat 162  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8287 aacgttagcgtaataaaaagagcggaaagacggacacat 8249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 4707 - 4740
Alignment:
Q  136 ataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  4707 ataaaaagagcggaaagacggacacgtgagtgcc 4740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 21425 - 21466
Alignment:
Q  128 ttagcgcgataaaaagagcggaaagacggacacatgagtgcc 169  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  21425 ttagcgcaataaaaagagcggaaagacggacacgcgagtgcc 21466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 24111 - 24172
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacggacacatgagtgc-cgtgttttcgctagta 184  Q
    ||||||||||| ||||||||| ||||||||||   |||||||||| ||| ||||||||||||    
T  24111 aacgttagcgcaataaaaagaacggaaagacgagtacatgagtgctcgtcttttcgctagta 24172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 1630 - 1598
Alignment:
Q  21 catggttattttggtttgttataacttgaaagc 53  Q
    |||||||| ||||||||||||||||||||||||    
T  1630 catggttagtttggtttgttataacttgaaagc 1598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 18696 - 18728
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  18696 aacgttagcgcaataaaaagagcggaaagacgg 18728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 2714 - 2746
Alignment:
Q  124 aacgttagcgcgataaaaagagcggaaagacgg 156  Q
    ||||||||||| |||||||||||||||||||||    
T  2714 aacgttagcgcaataaaaagagcggaaagacgg 2746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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