View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_39 (Length: 288)
Name: NF1523_low_39
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 44582429 - 44582166
Alignment:
| Q |
7 |
acatcatcaaaaacaaccggctgttcatctggcaaatggaaggttagcctctccactgaaggttttctgtagttaatgtcaaaagaaaaaattctccaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44582429 |
acatcatcaaaaacaaccggctgttcatctggcaaatggaaggttagcctctccactgaaggttttctgtagttaatgtcaaaagaaaaaattctccaag |
44582330 |
T |
|
| Q |
107 |
ctgcttcgaaagatgacaaatatctacagtcataatacatctttatttcatcatcacatttagaatcgttgttagcacgtgcattgttatagaagcttgc |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44582329 |
ctgcttcgcaagatgacaaatatctacagtcataataaatctttatttcatcatcacatttagaatcattgttagcacgtgcattgttatagaagcttgc |
44582230 |
T |
|
| Q |
207 |
agtgacgcgatcatgccctttgttgacaaatttaaacaagtactttaaagatcgagactggtta |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44582229 |
agtgacgcgatcatgccctttgttgacaaatttaaacaagtactttaaagatcgagactggtta |
44582166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 26166603 - 26166503
Alignment:
| Q |
58 |
tccactgaaggttttctgtagttaatgtcaaaagaaaaaattctccaagctgcttcgaaagatgacaaatatctacagtcataatacatctttatttcat |
157 |
Q |
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| T |
26166603 |
tccaccgaaggttctctataatttatgtcaaaagagaatattctccaggccgcttcacatgcggacaaataccgacaatcataatacatctttatctcat |
26166504 |
T |
|
| Q |
158 |
c |
158 |
Q |
| |
|
| |
|
|
| T |
26166503 |
c |
26166503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 38658280 - 38658380
Alignment:
| Q |
58 |
tccactgaaggttttctgtagttaatgtcaaaagaaaaaattctccaagctgcttcgaaagatgacaaatatctacagtcataatacatctttatttcat |
157 |
Q |
| |
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| T |
38658280 |
tccaccgaaggttctctgtaatttatgtcaaaagagaatattctccaggccgcttcacacgcggacaaataccgacaatcataatacatctttatctcat |
38658379 |
T |
|
| Q |
158 |
c |
158 |
Q |
| |
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| |
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|
| T |
38658380 |
c |
38658380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 1510514 - 1510414
Alignment:
| Q |
58 |
tccactgaaggttttctgtagttaatgtcaaaagaaaaaattctccaagctgcttcgaaagatgacaaatatctacagtcataatacatctttatttcat |
157 |
Q |
| |
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||||| ||||||| |||||| || ||||||||||| || |||||||| || ||||| | | |||||||| | ||| ||||||||||||||||| |||| |
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| T |
1510514 |
tccaccgaaggttctctgtaatttatgtcaaaagagaatattctccaggccgcttcacacgcggacaaataccgacaatcataatacatctttatctcat |
1510415 |
T |
|
| Q |
158 |
c |
158 |
Q |
| |
|
| |
|
|
| T |
1510414 |
c |
1510414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 41534563 - 41534601
Alignment:
| Q |
126 |
atatctacagtcataatacatctttatttcatcatcaca |
164 |
Q |
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||||||||| |||||||||||||||||||||||| |||| |
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| T |
41534563 |
atatctacaatcataatacatctttatttcatcaacaca |
41534601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 34419604 - 34419708
Alignment:
| Q |
61 |
actgaaggttttctgtagttaatgtcaaaagaaaaaattctccaagctgcttcgaaagatgacaaatatctacagtcataatacatctttatttcatcat |
160 |
Q |
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|||||||||| ||| || | |||||||| |||||||| |||||||| ||||| | | || ||||||| ||| ||||||||||| |||||||| ||| |
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| T |
34419604 |
actgaaggttctctataatgtatgtcaaatgaaaaaatcctccaagcagcttcacatgcagataaatatcgacaatcataatacatttttatttcgtcaa |
34419703 |
T |
|
| Q |
161 |
cacat |
165 |
Q |
| |
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||||| |
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|
| T |
34419704 |
cacat |
34419708 |
T |
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