View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_4 (Length: 558)
Name: NF1523_low_4
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 3 - 549
Target Start/End: Complemental strand, 17498162 - 17497622
Alignment:
| Q |
3 |
gttactaacatcttcatttctgccgagttatctgtataacttataagcttgtgttcagtttattaagataagtttctgaagnnnnnnnnnttataattat |
102 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |
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| T |
17498162 |
gttactaacatctccatttctgccgagttatctgtataacttataagtttgtgttcagtttattaagataagtttctgaagaaaaa------aaaattat |
17498069 |
T |
|
| Q |
103 |
gtgcaaaagttgannnnnnnagtttatgagagaatcttatagttagaataatactcatgattattacaatatcatttcaactttttctttactacaagtt |
202 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17498068 |
gtgcaaaagttgatttttttagtttataagagaatcttatagttagaataatactcataattattacaatatcatttcaactttttctttactacaagtt |
17497969 |
T |
|
| Q |
203 |
cttgtggaaatatttaacaaaattggttcattctctctaattgatcaccttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattg |
302 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17497968 |
cttgtggaaatatttatcaaaattggttcattctctctaattgatcaccttttttatttgatttttcattgcaatgtgctgaagaaaaactaacaaactg |
17497869 |
T |
|
| Q |
303 |
tactaatcaactgctttattttcttcaagtaaatggttaaccggtaattccatgtttttattaacttctgttagttttgaattctattttctgcatgcca |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17497868 |
tactaatcaactgctttattttcttcaagtaaatggttaaccggtaattccatgtttttatcaacttctgttagttttgaattctattttctgcatgcca |
17497769 |
T |
|
| Q |
403 |
aaacaaggaaacaggctccttccatgatttgtgttgcatagtaaccaatctcgactgtcctatctaaatccatgctagagattatttaaaattcattttg |
502 |
Q |
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| T |
17497768 |
aaacaaggaaacaggctccttccatgatttgtgttgcataggaaccgatctcgactgtccgatctaaatccatgctagagattatttaaaattcattttg |
17497669 |
T |
|
| Q |
503 |
taaatgtgtaatataaaccgcctgatctcaaatcaatagccgatatt |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17497668 |
taaatgtgtaatataaaccgcctgatctcaaatcaatagccgatatt |
17497622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 50 - 549
Target Start/End: Original strand, 14824483 - 14824977
Alignment:
| Q |
50 |
cttgtgttcagtttattaagataagtttctgaagnnnnnnnnnttataattatgtgcaaaagttgannnnnnn-agtttatgagagaatcttatagttag |
148 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
14824483 |
cttgtgttcagtttattaagataagtttctgaaggaaaa------aaaattatgtgcaaaagttgattttttttagtttataagagaatcttatagttag |
14824576 |
T |
|
| Q |
149 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatatttaacaaaattggttcattctctctaattgatc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14824577 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatatttatcaaaattggttcattctctctaattgatc |
14824676 |
T |
|
| Q |
249 |
accttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattgtactaatcaactgctttattttcttcaagtaaatggttaaccggta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14824677 |
accttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaactgtactaatcaactgctttattttcttcaagtaaatggttaaccggta |
14824776 |
T |
|
| Q |
349 |
attccatgtttttattaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttgtgttgcatagtaacc |
448 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14824777 |
attcgatgtttttatcaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttgtgttgcataggaact |
14824876 |
T |
|
| Q |
449 |
aatctcgactgtcctatctaaatccatgctagagattatttaaaattcattttgtaaatgtgtaatataaaccgcctgatctcaaatcaatagccgatat |
548 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14824877 |
gatctcgactgtccgatctaaatccattctagagattatttaaaattcattttgtaaatgtgtaatataaaccgcctgatctcaaatcaatagccgatat |
14824976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 50 - 549
Target Start/End: Original strand, 15271490 - 15271984
Alignment:
| Q |
50 |
cttgtgttcagtttattaagataagtttctgaagnnnnnnnnnttataattatgtgcaaaagttgannnnnnn-agtttatgagagaatcttatagttag |
148 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
15271490 |
cttgtgttcagtttattaagataagtttctgaaggaaaa------aaaattatgtgcaaaagttgattttttttagtttataagagaatcttatagttag |
15271583 |
T |
|
| Q |
149 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatatttaacaaaattggttcattctctctaattgatc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15271584 |
aataatactcatgattattacaatatcatttcaactttttctttactacaagttcttgtggaaatatttatcaaaattggttcattctctctaattgatc |
15271683 |
T |
|
| Q |
249 |
accttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaattgtactaatcaactgctttattttcttcaagtaaatggttaaccggta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15271684 |
accttttctatttgatttttcattgcaatgtgctgaagaaaaactaacaaactgtactaatcaactgctttattttcttcaagtaaatggttaaccggta |
15271783 |
T |
|
| Q |
349 |
attccatgtttttattaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttgtgttgcatagtaacc |
448 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15271784 |
attcgatgtttttatcaacttctgttagttttgaattctattttctgcatgccaaaacaaggaaacaggctccttccatgatttgtgttgcataggaact |
15271883 |
T |
|
| Q |
449 |
aatctcgactgtcctatctaaatccatgctagagattatttaaaattcattttgtaaatgtgtaatataaaccgcctgatctcaaatcaatagccgatat |
548 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15271884 |
gatctcgactgtccgatctaaatccattctagagattatttaaaattcattttgtaaatgtgtaatataaaccgcctgatctcaaatcaatagccgatat |
15271983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 548
Target Start/End: Complemental strand, 9995879 - 9995834
Alignment:
| Q |
503 |
taaatgtgtaatataaaccgcctgatctcaaatcaatagccgatat |
548 |
Q |
| |
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|||||||||||| ||||| | |||||||||||||||| |||||||| |
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|
| T |
9995879 |
taaatgtgtaatttaaactgtctgatctcaaatcaatggccgatat |
9995834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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