View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_42 (Length: 284)
Name: NF1523_low_42
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_42 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 6658620 - 6658851
Alignment:
| Q |
37 |
aatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
136 |
Q |
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|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6658620 |
aatggttaaagcatatgaaaggtagcataagtttaacagcttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
6658719 |
T |
|
| Q |
137 |
agctagtcttaatgatggaacctcttgttccacaatagatcccacaatatgcgtcggagaagctatcttagctactgattatcatgactactatttaaaa |
236 |
Q |
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|| |||| || ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||| | |
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| T |
6658720 |
agttagtgttgatgataagacccgttgttccacaatatatcccacaatatgcgcaggagaagctatcttagctacttattatcatgatgaatatttaaga |
6658819 |
T |
|
| Q |
237 |
tttttgatatgcaatacaacttgtttcattgc |
268 |
Q |
| |
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||||||||||||||||||| |||||||||||| |
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| T |
6658820 |
tttttgatatgcaatacaatttgtttcattgc |
6658851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 6739022 - 6739253
Alignment:
| Q |
37 |
aatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
136 |
Q |
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|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6739022 |
aatggttaaagcatatgaaaggtagcataagtttaacagcttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
6739121 |
T |
|
| Q |
137 |
agctagtcttaatgatggaacctcttgttccacaatagatcccacaatatgcgtcggagaagctatcttagctactgattatcatgactactatttaaaa |
236 |
Q |
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| T |
6739122 |
agttagtgttgatgataagacccgttgttccacaatatatcccacaatatgcgcaggagaagctatcttagctacttattatcatgatgaatatttaaga |
6739221 |
T |
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| Q |
237 |
tttttgatatgcaatacaacttgtttcattgc |
268 |
Q |
| |
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||||||||||||||||||| |||||||||||| |
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| T |
6739222 |
tttttgatatgcaatacaatttgtttcattgc |
6739253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 6749661 - 6749892
Alignment:
| Q |
37 |
aatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
136 |
Q |
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|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6749661 |
aatggttaaagcatatgaaaggtagcataagtttaacagcttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
6749760 |
T |
|
| Q |
137 |
agctagtcttaatgatggaacctcttgttccacaatagatcccacaatatgcgtcggagaagctatcttagctactgattatcatgactactatttaaaa |
236 |
Q |
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|| |||| || |||| | | ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||| | |
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| T |
6749761 |
agttagtgttgttgatattatcctttgttccacaatatatcccacaatatgcgcaggagaagctatcttagctacttattatcatgatgaatatttaaga |
6749860 |
T |
|
| Q |
237 |
tttttgatatgcaatacaacttgtttcattgc |
268 |
Q |
| |
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||||||||||||||||||| |||||||||||| |
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| T |
6749861 |
tttttgatatgcaatacaatttgtttcattgc |
6749892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 6756452 - 6756683
Alignment:
| Q |
37 |
aatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
136 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6756452 |
aatggttaaagcatatgaaaggtagcataagtttaacagcttccataatcgcaactatgacattttcacttgccactaatccacctggtggcgttgtgca |
6756551 |
T |
|
| Q |
137 |
agctagtcttaatgatggaacctcttgttccacaatagatcccacaatatgcgtcggagaagctatcttagctactgattatcatgactactatttaaaa |
236 |
Q |
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||||||| || |||| | | | |||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||| | ||||||| | |
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| T |
6756552 |
agctagtgttggtgatagcaaccaatgttccacaataaatcccacaatatgcgcaggagaagctatcttagctacttatcatcatgatgaatatttaaga |
6756651 |
T |
|
| Q |
237 |
tttttgatatgcaatacaacttgtttcattgc |
268 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
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| T |
6756652 |
tttttgatatgcaatacaatttgtttcattgc |
6756683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 6615098 - 6615255
Alignment:
| Q |
16 |
aaaatccttctaaagatatagaatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaa |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||| |||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||| |
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| T |
6615098 |
aaaatccttctaaagataataaatggttagacgatatgaaaggtagcataagtttaacagcttccctgatcgcaactctgacattttcacttgccactaa |
6615197 |
T |
|
| Q |
116 |
tccacctggtggcgttgtgcaagctagtcttaatgatggaacctcttgttccacaata |
173 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| | | || ||||||||||||| |
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| T |
6615198 |
tccacctggtggcgttgtgcaagctagtcttgatgatagcaactattgttccacaata |
6615255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 19059600 - 19059473
Alignment:
| Q |
16 |
aaaatccttctaaagatatagaatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
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| T |
19059600 |
aaaatccttctaaagatatagaatggttaaaagatatgaaaagtagcataagtttaacagcttccctaatcgcaactctgacattttcacttgccactaa |
19059501 |
T |
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| Q |
116 |
tccacctggtggcgttgtgcaagctagt |
143 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
19059500 |
tccacctggtggcgttgtgcaagctagt |
19059473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 268
Target Start/End: Complemental strand, 19059436 - 19059333
Alignment:
| Q |
165 |
tccacaatagatcccacaatatgcgtcggagaagctatcttagctactgattatcatgactactatttaaaatttttgatatgcaatacaacttgtttca |
264 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||||||||| || ||| | |||||| | ||| || ||||||||||||||||||| |||||||| |
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| T |
19059436 |
tccacaataaataccacaatatgcgtaggagaagctatcttggcaactagatctcatgataagtatctagcttttttgatatgcaatacaatttgtttca |
19059337 |
T |
|
| Q |
265 |
ttgc |
268 |
Q |
| |
|
|||| |
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|
| T |
19059336 |
ttgc |
19059333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 4384 - 4541
Alignment:
| Q |
16 |
aaaatccttctaaagatatagaatggttaaaagatatgaaaagtagcataagtttaacagtttccataatcgcaactatgacattttcacttgccactaa |
115 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||| |||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||| |
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| T |
4384 |
aaaatccttctaaagataataaatggttagacgatatgaaaggtagcataagtttaacagcttccctgatcgcaactctgacattttcacttgccactaa |
4483 |
T |
|
| Q |
116 |
tccacctggtggcgttgtgcaagctagtcttaatgatggaacctcttgttccacaata |
173 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| | | || ||||||||||||| |
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| T |
4484 |
tccacctggtggcgttgtgcaagctagtcttgatgatagcaactattgttccacaata |
4541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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