View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_5 (Length: 525)
Name: NF1523_low_5
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 263 - 510
Target Start/End: Original strand, 31061062 - 31061309
Alignment:
| Q |
263 |
gagagggactaggccaaaaccctcaataataacagcaaaagagataattaggggaatctaaaattcgaaagacaatggcattataaaagtcctgcctaag |
362 |
Q |
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| T |
31061062 |
gagagggactaggccaaaaccctcaataataacagcaaaagagataattaggagaatctaaaattcgaaagacaatggcattataaaagtcctgcctaag |
31061161 |
T |
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| Q |
363 |
aaaaatattgggacatcggttaacaaaactttattcaattaaatataaatattttatacataactaagatcacaattgaagaaacttttgattttcttca |
462 |
Q |
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| T |
31061162 |
aaaaatattgggacatccgttaacaaaactttattcaattaaatataaatattttatacatagctaagatcacaattgaagaaacttttgattttcttca |
31061261 |
T |
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| Q |
463 |
atggttacacaatttcattggtcatgaaagctgtgtctataatcaaat |
510 |
Q |
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| T |
31061262 |
atggttacacaatttcattggtcatgaaagctgtgtctataatcaaat |
31061309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31060802 - 31061026
Alignment:
| Q |
1 |
aatatattttacttttgccttcttaaaaaacaattagagaagtatcgtcaagggttcttaaatattcttattattaacacatttgttgttcttaaaaagg |
100 |
Q |
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| T |
31060802 |
aatatattttactcttgccttcttaaaaaacaattagagaaatatcgtcaagggttcttaaatattcttattattagcacatttgttgttcttaaaaagg |
31060901 |
T |
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| Q |
101 |
aatatttgatcattttatatggannnnnnnnnnatgaatcaagagaacaagggagacatcaaggagaacttagacgtaataactaggttgacaccctgta |
200 |
Q |
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| T |
31060902 |
aatatttgatcattttatattga--ttttttttataaatcaagagagcaagggaggcatcaaggagaacttagacgtaataactaggttgacatcccgta |
31060999 |
T |
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| Q |
201 |
gctgctcctatcctctaccatcttctc |
227 |
Q |
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| T |
31061000 |
gctgctcctatcctctaccatcttctc |
31061026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 17109087 - 17109021
Alignment:
| Q |
269 |
gactaggccaaaaccctcaataataacagcaaaagagataattaggggaatctaaaattcgaaagac |
335 |
Q |
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| T |
17109087 |
gactaggccaaaaccctaaaaaataacaacaaaagtgggaattaatggaatctaaaattcgcaagac |
17109021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 31922448 - 31922380
Alignment:
| Q |
267 |
gggactaggccaaaaccctcaataataacagcaaaagagataattaggggaatctaaaattcgaaagac |
335 |
Q |
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| T |
31922448 |
gggactaagccaaaaccctaaaaaatgacaacaaaagagggaactatgggaatctaaaattcggaagac |
31922380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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