View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_50 (Length: 260)
Name: NF1523_low_50
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 29783137 - 29782948
Alignment:
| Q |
56 |
gtctgtccgcattttttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctcaaaaaataagttagtcaataactta |
155 |
Q |
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|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29783137 |
gtctgtccgcattttttactacgctaacgtattgatatgtttcttcgtgaataagtttagccaatagaaaccctcaagaaataggttagtcaataacttg |
29783038 |
T |
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| Q |
156 |
ttaataaataaattggtgattaaatgatacatagttagtaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatg |
245 |
Q |
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| T |
29783037 |
ttaataaataaattggtgattaaatgatacatagttaataaatcattagaacttacggtcattagaaatgccaacaccacctgtgccatg |
29782948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 508292 - 508481
Alignment:
| Q |
56 |
gtctgtccgcattttttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctcaaaaaataagttagtcaataactta |
155 |
Q |
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|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
508292 |
gtctgtccgcattttttactgcgctaacgtattgatatgtttcttcgtgaataagtttagccaatagaaaccctaaataaataggttagtcaataacttg |
508391 |
T |
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| Q |
156 |
ttaataaataaattggtgattaaatgatacatagttagtaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatg |
245 |
Q |
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| T |
508392 |
ttaataaataaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattaaaaatgccaacaccacatgtgccatg |
508481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 35577382 - 35577567
Alignment:
| Q |
56 |
gtctgtccgcattttttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctcaaaaaataagttagtcaataactta |
155 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
35577382 |
gtctgtccgcattttttattgcgctaacgtattgatatgtttcttcgtgaataagtttagccaatagaaaccctaaataaataggttagtcaataacttg |
35577481 |
T |
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| Q |
156 |
ttaataaataaattggtgattaaatgatacatagttagtaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgc |
241 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
35577482 |
ttaataaataaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattagaaatgccaacaccacctgtgc |
35577567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 44921808 - 44921994
Alignment:
| Q |
56 |
gtctgtccgcatttt-ttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctcaaaaaataagttagtcaataactt |
154 |
Q |
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||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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| T |
44921808 |
gtctgtccgcatttttttattgcgctaacgtattgatatgtttcttcgtgaataagtttagccaatagaaaccctaaataaataggttagtcaataactt |
44921907 |
T |
|
| Q |
155 |
attaataaataaattggtgattaaatgatacatagttagtaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgc |
241 |
Q |
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| T |
44921908 |
gttaataaataaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattagaaatgccaacaccacctgtgc |
44921994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 33075 - 33007
Alignment:
| Q |
63 |
cgcattttttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctca |
131 |
Q |
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| T |
33075 |
cgcattttttactacgctaacgtattgatatgtttattcgtgaataagtttagccaatagaaaccctca |
33007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 46123036 - 46122884
Alignment:
| Q |
56 |
gtctgtccgcattttttattgcgctaacatatcgatatgtttcttcgtgaataagtttagccaatagaaaccctcaaaaaataagttagtcaataactta |
155 |
Q |
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|||||| ||||||||||| ||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46123036 |
gtctgttcgcattttttactgcgctaacgtattgatatgtttcttcatgaataaatttagccaatagaaaccctcaaaaaataggttagtcaataacttg |
46122937 |
T |
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| Q |
156 |
ttaataaataaattggtgattaaatgatacatagttagtaaatcattagaactt |
209 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
46122936 |
ttaataaataaattggtgattaaatgatacat-gttaataaatcattagaactt |
46122884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 46122867 - 46122817
Alignment:
| Q |
195 |
aaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatg |
245 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46122867 |
aaatcattagaacttagggtcattagaaatgccaacaccaccagtgccatg |
46122817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 1414092 - 1414053
Alignment:
| Q |
203 |
agaacttagggtcattagaaatgtcaacaccaccagtgcc |
242 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |
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| T |
1414092 |
agaacttagggtcattagaaatgccaacaccaccagtgcc |
1414053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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