View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_51 (Length: 258)
Name: NF1523_low_51
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34315460 - 34315700
Alignment:
| Q |
1 |
aagcattgtgctaaatctttgggatcattaattgagtttgccatttcaaagcttggaaacaacattcaagcactttcaagttccttcatagataatcaag |
100 |
Q |
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| T |
34315460 |
aagcattgtgctaaatctttgggatcattaattgagtttgccatttcaaagcttggaaacaacattcaagcactttcaagttccttaatagataatcaag |
34315559 |
T |
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| Q |
101 |
aacaatacactgtagagtctgttcaaaatcttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtcatagaattcg |
200 |
Q |
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| T |
34315560 |
aacaatacactgtagagtctgtacaaaatcttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtcatagaattcg |
34315659 |
T |
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| Q |
201 |
tgcaaccacagctttcatggttccgttggtggccggtgatg |
241 |
Q |
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| T |
34315660 |
tgcaaccacagctttcatggttccgttggtggccggtgatg |
34315700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 34251060 - 34251287
Alignment:
| Q |
6 |
ttgtgctaaatctttgggatcattaattgagtttgccatttcaaagcttggaaacaacattcaagcactttcaagttccttcatagataatcaagaacaa |
105 |
Q |
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| T |
34251060 |
ttgtgcaaaatccttaggaacattaatcggattttcaatttctaagcttggaaaaaatattcaagcactttcaagttccttcattgataaacatgaacaa |
34251159 |
T |
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| Q |
106 |
tacactgtagagtctgttcaaaatcttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtcatagaattcgtgcaa |
205 |
Q |
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| T |
34251160 |
tacaaaatagagtcagttcaaaatcttggagagaaagcagtgatgtgtcataggttgaactttcaaaaggttgtattttattgtcatgaaattcatggaa |
34251259 |
T |
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| Q |
206 |
ccacagctttcatggttccgttggtggc |
233 |
Q |
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| T |
34251260 |
caacagcttttatggttccattggtggc |
34251287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 34241298 - 34241525
Alignment:
| Q |
6 |
ttgtgctaaatctttgggatcattaattgagtttgccatttcaaagcttggaaacaacattcaagcactttcaagttccttcatagataatcaagaacaa |
105 |
Q |
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|||||| ||||| || ||| ||||||||| ||||| |||||||| |||||||| || |||||| ||||||||||||||||||| ||||| || |||||| |
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| T |
34241298 |
ttgtgcaaaatccttaggaacattaattggatttgcaatttcaaaacttggaaaaaatattcaatcactttcaagttccttcattgataaacatgaacaa |
34241397 |
T |
|
| Q |
106 |
tacactgtagagtctgttcaaaatcttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtcatagaattcgtgcaa |
205 |
Q |
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| T |
34241398 |
tacaaaatagaatcggtgcaaaatcttggagacaaagcagtgatgtgtcataggttgaactttcaaaaagttgtattttattgtcatgaagttcatggaa |
34241497 |
T |
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| Q |
206 |
ccacagctttcatggttccgttggtggc |
233 |
Q |
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| T |
34241498 |
caacagcttttaaggttccattggtggc |
34241525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 17004238 - 17004298
Alignment:
| Q |
131 |
ttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtca |
191 |
Q |
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||||||| |||| |||||||||||| || || |||||| |||| ||||||| ||||||||| |
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| T |
17004238 |
ttggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtca |
17004298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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