View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_52 (Length: 254)
Name: NF1523_low_52
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1414175 - 1414434
Alignment:
| Q |
1 |
tacaacaaaaaataacaaacttttaaacaaacaag-caattacttgtaacataagtaaagtctttaaaagtccattaatcaaggtaattatctaactaac |
99 |
Q |
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| T |
1414175 |
tacaacaaaaaataacaaactttttaacaaacaaggcaattacttgtaacataagtaaagtctctaaaactccattaatcaaggtaactatctaactaac |
1414274 |
T |
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| Q |
100 |
taatgg-----------------taaccatctttttataacgtttgttgttgccacaaaagtattaattttgtgattcacaagtcaccannnnnnnnaac |
182 |
Q |
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|||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |
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| T |
1414275 |
taatggattacactttcaaatactaactatctttttataacgtttgttgttgccacgaaagtattaattttgtgattcacaagccaccattttttttaac |
1414374 |
T |
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| Q |
183 |
acataaataacactcttaattatggttggtattgctttaacaaacgtgtgtcctatgcta |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1414375 |
acataaataacactcttaattatggttggtattgctttaacaaacgtgtgtcctttgcta |
1414434 |
T |
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