View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_55 (Length: 247)
Name: NF1523_low_55
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_55 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 3148205 - 3148447
Alignment:
| Q |
5 |
tgtcgaataatatacacgtcttccaacaaaagtctcggtattgtattgagnnnnnnnnnnnnnnnnngcctgatcaatgcctgcataactaccaggatat |
104 |
Q |
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| T |
3148205 |
tgtcgaacaatgtacacgtcttccaacaaaagtctcggtattgtattgagttttttttttactttttgcctgatcaatgcctgcataactaccaggatat |
3148304 |
T |
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| Q |
105 |
cacattttagaacacttaaccatttttatatttctacaccaatatgttctgtttcttaataatgtttatatttgtaatattcatttgagtcaatcatttt |
204 |
Q |
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| T |
3148305 |
cacattttagaacacttaaccatttttctatttctacaccaatatgttctgtttcttaataatgtttatatttgtaatattcatttgagtcaatcatttt |
3148404 |
T |
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| Q |
205 |
cataagcacccaagtttgacaaaatctgataagaagaatatat |
247 |
Q |
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| T |
3148405 |
caggagcacccaagtttgactaaatctgaaaagaagaatatat |
3148447 |
T |
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