View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1523_low_56 (Length: 243)
Name: NF1523_low_56
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_56 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 19798886 - 19799118
Alignment:
| Q |
1 |
attcattacaagtgtacaagtactatctatatgcagttattaaatggtggtacaaactagttactgtggtgctagttacacagaattactaacacctatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
19798886 |
attcattacaagtgtacaagtactatctatatgcagttattaaatggtggtacaaactagttactgtggtgctagccgcacaaaattactaacacctatg |
19798985 |
T |
|
| Q |
101 |
caactaacatctaacagacaactacttatcaactaattctgttatagtgttgtattcttcatcttgacatc-----tccttcaatatcccccactagatg |
195 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || ||||| |
|
|
| T |
19798986 |
caactaacatctaatggacaactatttatcaactaattctgttatagtgttgtgttcttcatcttggcatctaacttccttcaatatctctgacaagatg |
19799085 |
T |
|
| Q |
196 |
aatccttgtatatgtctaccattcatgttttgt |
228 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |
|
|
| T |
19799086 |
aatcctggtatatgtctactattcatgttttgt |
19799118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University