View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_57 (Length: 241)
Name: NF1523_low_57
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33320430 - 33320666
Alignment:
| Q |
1 |
aaaattcttcatatatatagactaaaataagacaagaaaatattgtgaatttagtaaggtatattaagacaaaattaatattattcnnnnnnnnnnnnac |
100 |
Q |
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| T |
33320430 |
aaaattcttcatatatatagactaaaataagacaagaaaatattgtgaatttagtaaggtatattaagacaaaattaatattattctttttttt----at |
33320525 |
T |
|
| Q |
101 |
taaattaatattatccttatagtttgaagctaat---------------gtgatgcacaccccatgatcacgtgaaacaaacataaatataaatatagaa |
185 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33320526 |
taaattaatattatccttatagtttgaagctaattataataatatgaacgtgatgcacaccccatgatcacgtgaaacaaacataaatataaatatagaa |
33320625 |
T |
|
| Q |
186 |
tagaaaatatacggtaccgtggtagaatttccagaaacaga |
226 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33320626 |
tagaaaagatacggtaccgtggtagaatttccagaaacaga |
33320666 |
T |
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