View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_58 (Length: 238)
Name: NF1523_low_58
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_58 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6968 - 6746
Alignment:
| Q |
1 |
tgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
6968 |
tgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattg |
6869 |
T |
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| Q |
101 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatc |
200 |
Q |
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| T |
6868 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatc |
6769 |
T |
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| Q |
201 |
ggcgccggaacggagagctactg |
223 |
Q |
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||| |||||||||||||| |||| |
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| T |
6768 |
ggcaccggaacggagagccactg |
6746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44087667 - 44087445
Alignment:
| Q |
1 |
tgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatgg |
100 |
Q |
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| T |
44087667 |
tgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattg |
44087568 |
T |
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| Q |
101 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatc |
200 |
Q |
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| T |
44087567 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatc |
44087468 |
T |
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| Q |
201 |
ggcgccggaacggagagctactg |
223 |
Q |
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||| |||||||||||||| |||| |
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| T |
44087467 |
ggcaccggaacggagagccactg |
44087445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44092943 - 44093165
Alignment:
| Q |
1 |
tgtgctgttacggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatgg |
100 |
Q |
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| T |
44092943 |
tgtgctgttacggtgttcttttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattg |
44093042 |
T |
|
| Q |
101 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaacagagtgatc |
200 |
Q |
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| T |
44093043 |
ttccatagatgttgcagtcacggtagaattgacggttggcgtaaacatataaagtgtcttggaagcctttgaaggcgcaacggtagaaaacagagtgatc |
44093142 |
T |
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| Q |
201 |
ggcgccggaacggagagctactg |
223 |
Q |
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||| |||||||||||||| |||| |
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| T |
44093143 |
ggcaccggaacggagagccactg |
44093165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 44067647 - 44067827
Alignment:
| Q |
11 |
cggtgttctgttggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcattaccgaagatgaaatcgatggttccatagat |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
44067647 |
cggtgttctattggttgctcattggttttctgacaaagatgttgcagttttgaaggacagtaacggcgttaccgaagatgaaatcgattgttccatagat |
44067746 |
T |
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| Q |
111 |
gttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcgcaacggtagaaaac |
191 |
Q |
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| T |
44067747 |
gttgcagtcacggtagaattgacggttggcgtaagcatataaggtgtcttggtaacctttgaaggcacaacggtagaaaac |
44067827 |
T |
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