View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_64 (Length: 227)
Name: NF1523_low_64
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 15002007 - 15002217
Alignment:
| Q |
1 |
atcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15002007 |
atcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccatt |
15002106 |
T |
|
| Q |
101 |
ctcctaaccccttctaaatgaacgaaa--ttgtctctacacctctgttctagctttgacatttatgtattaacctttctcaagcttcctccaaggttaca |
198 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15002107 |
ctcctaatcccttctaaatgaacgaaattttgtctctacacctctgttctagctttgacattcatgtattaacctttctcaagcttcctccaaggttaca |
15002206 |
T |
|
| Q |
199 |
gctcccaaatc |
209 |
Q |
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||||||||||| |
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| T |
15002207 |
gctcccaaatc |
15002217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9821548 - 9821338
Alignment:
| Q |
1 |
atcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9821548 |
atcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgaagaaagtacagcaacacctccatt |
9821449 |
T |
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| Q |
101 |
ctcctaaccccttctaaatgaacgaaa--ttgtctctacacctctgttctagctttgacatttatgtattaacctttctcaagcttcctccaaggttaca |
198 |
Q |
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||||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| || |||| ||||| |
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| T |
9821448 |
ctcctaacctcttctaaatgaacgaaattttgtctctaaacctctattctagctttgacattcatgtattaacctttctcaagctttcttcaagtttaca |
9821349 |
T |
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| Q |
199 |
gctcccaaatc |
209 |
Q |
| |
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||||||||||| |
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| T |
9821348 |
gctcccaaatc |
9821338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 44061158 - 44061345
Alignment:
| Q |
1 |
atcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccatt |
100 |
Q |
| |
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|||||||||||||||| ||||| ||||||| || | |||||||| |||| || |||||||| ||||| ||| |||||||| ||||||||||| ||| || |
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| T |
44061158 |
atcagctctagtgtttattgaggaatcaaa-caatcttgttggtgtctacaggtgaagaaagaacactgattctgcagaaaatacagcaacacttccctt |
44061256 |
T |
|
| Q |
101 |
ctcctaaccccttctaaatgaacgaaatt---gtctctacacctctgttctagctttgacatttatgtattaacctttctcaagcttcct |
187 |
Q |
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||| ||| |||||| ||| | || ||||| ||||||| ||| || ||||||||| ||||| | |||||||||||||| |||||||| |
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| T |
44061257 |
ctcataaacccttcaaaaagcac-aaattctggtctctaaacccctattctagcttcaacattcaagtattaacctttctatagcttcct |
44061345 |
T |
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