View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_65 (Length: 226)
Name: NF1523_low_65
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 29421844 - 29421731
Alignment:
| Q |
12 |
atgaaacagacattctagttagcacacacctcctcctacatttagtggtagcaaaagcactgtgcaacaggggcatggatatggatcctccaaactagta |
111 |
Q |
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| T |
29421844 |
atgaaacaaacattctagttagcacacacctcctcctacatttagtggtaccagaagcactgtgcaacaggggcatggatatggatccttcaaactagta |
29421745 |
T |
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| Q |
112 |
ggtccattgatgca |
125 |
Q |
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| T |
29421744 |
ggtccattgatgca |
29421731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 29457892 - 29457760
Alignment:
| Q |
54 |
tagtggtagcaaaagcactgtgcaacaggggcatggatatggatcctccaaactagtaggtccattgatgcataatgatcatcataataattcaaagaac |
153 |
Q |
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| T |
29457892 |
tagtggtagcagaagcattgtgcaacatactcagggatatggatccttcaaactagtag---ca--gatgcataatgatcatcataatagtttaaagaac |
29457798 |
T |
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| Q |
154 |
acaaagcaaccaaagttcaacaaaagatagctgcaaat |
191 |
Q |
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| T |
29457797 |
acaaaacaacagaagttcaacaaaagatagctgcaaat |
29457760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 45747321 - 45747267
Alignment:
| Q |
121 |
atgcataatgatcatcataataattcaaagaacacaaagcaaccaaagttcaacaa |
176 |
Q |
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| T |
45747321 |
atgcataatgatcatcataatagttcaaagaacac-aagcaacaaaacttcaacaa |
45747267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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