View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_66 (Length: 224)
Name: NF1523_low_66
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 83820 - 84002
Alignment:
| Q |
17 |
atggtgaaatttttaaatgaaccaaaccattccaaatttttcaattgaaagggattagtcgaaggataagttatataattataaatataaatgatagaaa |
116 |
Q |
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| T |
83820 |
atggtgaaatttttaaatgaaccaaaccattccaaatttttcaattgaaagggattagt------------tatataattataaatataaatgatagaaa |
83907 |
T |
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| Q |
117 |
cagaaatgttgaaagtgattttgg-agaaagaaaaaatttgatttctcatcaaagatgtggtactattttgtttaatatgtggttgtgattcctg |
210 |
Q |
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| T |
83908 |
tagaaatgttgaaagtgattttgggagaaagaaaaaatttgatttctcatcaaagatgtggtactattttgttcaatatgtggttgtgattcctg |
84002 |
T |
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