View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_67 (Length: 218)

Name: NF1523_low_67
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_67
NF1523_low_67
[»] chr7 (3 HSPs)
chr7 (40-200)||(32934814-32934974)
chr7 (126-200)||(32923793-32923867)
chr7 (133-200)||(32911800-32911867)
[»] chr4 (1 HSPs)
chr4 (126-200)||(11823932-11824006)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 40 - 200
Target Start/End: Original strand, 32934814 - 32934974
Alignment:
Q  40 gcagaatatattgttaataagtgtttgtactatatattttcattataattgtgtggtattttgtgccctggatttaaattggcaaccttgtcatctttat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32934814 gcagaatatattgttaataagtgtttgtactatatattttcattataattgtgtggtattttgtgccctggatttaaattggcaaccttgtcatctttat 32934913  T
Q  140 aggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32934914 aggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagt 32934974  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 32923793 - 32923867
Alignment:
Q  126 cttgtcatctttataggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagt 200  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||||||||||  ||||||||||||||||||||    
T  32923793 cttgtcatctttataggtgacagttaactatgcattggggaaattgggaaaaaaattcacaaaaacagtgggagt 32923867  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 32911800 - 32911867
Alignment:
Q  133 tctttataggtgacagttaactacatattggggaattt-gggaaaaagcttcacaaaaacagtgggagt 200  Q
    |||| ||||||||||||||||||   |||||||||||| ||||||||| | ||||||||||||||||||    
T  32911800 tcttaataggtgacagttaactatgcattggggaatttagggaaaaag-tacacaaaaacagtgggagt 32911867  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 11823932 - 11824006
Alignment:
Q  126 cttgtcatctttataggtgacagttaactacatattggggaatttgggaaaaagcttcacaaaaacagtgggagt 200  Q
    ||||||||||||||||||||||||||||||   |||||||| |||||| ||||  ||||||||||||||||||||    
T  11823932 cttgtcatctttataggtgacagttaactatgcattggggactttggggaaaaaattcacaaaaacagtgggagt 11824006  T

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