View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1523_low_8 (Length: 460)
Name: NF1523_low_8
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1523_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 181 - 453
Target Start/End: Original strand, 8134852 - 8135128
Alignment:
| Q |
181 |
gtgtcgatacttcagtgttgtatacaatgtgtgtttatgtcaatatcatgtgtggtgtttgatatcattgatcgattagaaatagtgtttgattatatgt |
280 |
Q |
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| T |
8134852 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgattgattagaaatagtgtttgattatatgt |
8134951 |
T |
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| Q |
281 |
tgcactgaaatttaagattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgc----nnn |
376 |
Q |
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| T |
8134952 |
tgcactgaaatttcagattgaaaatgtgtttggcgtccaaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcttttttt |
8135051 |
T |
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| Q |
377 |
nnnnnncttaaattattagaagtgtatatacgtatttatcaatgttgtgtctgatatatgtgtcgacgtgtcctatg |
453 |
Q |
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| T |
8135052 |
ttttctcttaaattattagaagtgtatatgcgtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatg |
8135128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 8135092 - 8135199
Alignment:
| Q |
33 |
aatgttgtgtcttaaataggtgtagacgtgtcatatgtagcacagaaactttagattgaaaacgtgtatagcatccgatatgacaccaaaacatgtggtt |
132 |
Q |
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| T |
8135092 |
aatgttgtgtctgatatacgtgtcgacgtgtcctatgtagctccgaaactttagattgaagacgtgtctagcatccgatatgacaccaaaacatgttgtt |
8135191 |
T |
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| Q |
133 |
acattcaa |
140 |
Q |
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| T |
8135192 |
acattcaa |
8135199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 8134582 - 8134648
Alignment:
| Q |
296 |
gattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgta |
362 |
Q |
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| T |
8134582 |
gattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgta |
8134648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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