View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1523_low_9 (Length: 452)

Name: NF1523_low_9
Description: NF1523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1523_low_9
NF1523_low_9
[»] scaffold0536 (2 HSPs)
scaffold0536 (7-437)||(6494-6924)
scaffold0536 (7-399)||(10514-10906)
[»] chr4 (6 HSPs)
chr4 (2-437)||(48912328-48912763)
chr4 (7-434)||(48957910-48958337)
chr4 (73-434)||(48965161-48965519)
chr4 (217-434)||(48961267-48961486)
chr4 (208-322)||(48974085-48974199)
chr4 (250-293)||(48951252-48951295)
[»] chr2 (3 HSPs)
chr2 (79-434)||(13448201-13448553)
chr2 (97-434)||(13440056-13440390)
chr2 (81-434)||(13454674-13455024)
[»] chr6 (2 HSPs)
chr6 (217-437)||(12590152-12590375)
chr6 (229-395)||(12483492-12483658)
[»] chr8 (2 HSPs)
chr8 (174-434)||(12641467-12641727)
chr8 (81-150)||(12641751-12641820)
[»] chr5 (2 HSPs)
chr5 (79-392)||(12540523-12540836)
chr5 (345-430)||(28385438-28385520)
[»] chr7 (1 HSPs)
chr7 (97-434)||(3417516-3417850)


Alignment Details
Target: scaffold0536 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Complemental strand, 6924 - 6494
Alignment:
Q  7 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctccagcatacttttttattttctcagcttcgtcaccaccatccatcaatc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  6924 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctcgagcatactttttgattttctcagcttcgtcaccaccatccatcaatc 6825  T
Q  107 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6824 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 6725  T
Q  207 tcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724 tcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 6625  T
Q  307 cacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatat 406  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6624 cacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatat 6525  T
Q  407 ttctctcttcgaatccctttggcaaccattt 437  Q
    |||||||||||||||||||||||||||||||    
T  6524 ttctctcttcgaatccctttggcaaccattt 6494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 10906 - 10514
Alignment:
Q  7 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctccagcatacttttttattttctcagcttcgtcaccaccatccatcaatc 106  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||    | | ||| |||||||| | | || |   ||||||||||    
T  10906 tgagatgaaccaccttcctgagccgcacatttagccttatccccaaactctcgagcatgtcgtctgattatctcagctacataactattgtccatcaatc 10807  T
Q  107 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 206  Q
    || ||||| |||||||||||| ||||||||| |||| ||||||| ||||||||||||||  | | | ||||||  |||| |||||  || ||||||| |     
T  10806 tcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttcccccccaatccc 10707  T
Q  207 tcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 306  Q
     ||||| || ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| || |||||||||    
T  10706 ccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattc 10607  T
Q  307 cacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt 399  Q
    ||||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| |||||||||||||||||||||||    
T  10606 cacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttcttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 437
Target Start/End: Complemental strand, 48912763 - 48912328
Alignment:
Q  2 tcgagtgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctccagcatacttttttattttctcagcttcgtcaccaccatccat 101  Q
    |||| ||||||||||||||||||| |   ||||||||||| || ||||||||||||| |||||  | | | |||||||||||||| |||||||  |||||    
T  48912763 tcgaatgagatgaaccaccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccat 48912664  T
Q  102 caatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccacccca 201  Q
    ||||| | ||||| ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| ||||||||    
T  48912663 caatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctccacccca 48912564  T
Q  202 attcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtgg 301  Q
    || |   ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  48912563 atcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtgg 48912464  T
Q  302 aattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttcc 401  Q
    |||||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | |||||||||||||    
T  48912463 aattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttcc 48912364  T
Q  402 gatatttctctcttcgaatccctttggcaaccattt 437  Q
    |||| |||||||||| || |||||||||||||||||    
T  48912363 gataattctctcttcaaacccctttggcaaccattt 48912328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 48957910 - 48958337
Alignment:
Q  7 tgagatgaaccaccttcttgagccgcatgtttagccttatccccaaactctccagcatacttttttattttctcagcttcgtcaccaccatccatcaatc 106  Q
    |||||||| |||||||||||| | ||  || ||||||| || || ||||||  ||||  || ||| |||| ||||||||| |||||||| ||||||||||    
T  48957910 tgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttgatttcctcagcttcatcaccaccgtccatcaatc 48958009  T
Q  107 tcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcg 206  Q
    || |||||||||| || ||||||||  | | ||| | ||||| | ||||| ||| |||  ||  || |||||| | ||| || ||| ||||||||||||     
T  48958010 tcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccaacctccaccccaattcc 48958109  T
Q  207 tcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattc 306  Q
    |||||| |  ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||    
T  48958110 tcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccacagtggagttc 48958209  T
Q  307 cacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatat 406  Q
    ||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||||||||| || |    
T  48958210 cacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttctttccaatgt 48958309  T
Q  407 ttctctcttcgaatccctttggcaacca 434  Q
    |||||||||||||||| || ||||||||    
T  48958310 ttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 73 - 434
Target Start/End: Original strand, 48965161 - 48965519
Alignment:
Q  73 attttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaac 172  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||| || ||||| || | ||||| ||||||||| ||  ||| ||||||  |||    
T  48965161 attttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaac 48965260  T
Q  173 tccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcgg 272  Q
     ||| || | ||| || ||  |||| ||||| | |||||| | ||||||||  ||||| ||||| ||||||||||| ||    ||||| || ||||||||    
T  48965261 accattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgg 48965360  T
Q  273 aacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaa 372  Q
    |||||| |||| ||||||||| || ||||| ||||| |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || |||||||||    
T  48965361 aacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaa 48965460  T
Q  373 cccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 434  Q
    |||||||||||||||||   ||||||||| || ||||||||||||||||||||||| |||||    
T  48965461 cccctaataatcaaacc---cttctttccaatgtttctctcttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 217 - 434
Target Start/End: Original strand, 48961267 - 48961486
Alignment:
Q  217 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 314  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  315 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctct 414  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  415 tcgaatccctttggcaacca 434  Q
    || ||||| || ||||||||    
T  48961467 tcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 48974085 - 48974199
Alignment:
Q  208 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 307  Q
    |||||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttcc 48974184  T
Q  308 acccacaatgcgtca 322  Q
    |||| ||||| ||||    
T  48974185 acccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  250 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 293  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 434
Target Start/End: Original strand, 13448201 - 13448553
Alignment:
Q  79 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccact 178  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || ||||| || | ||| | ||||| ||||||| | | |||| | | || ||| |    
T  13448201 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccatt 13448300  T
Q  179 cagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccc 278  Q
    | | ||| || ||  | || ||||||| ||| |  ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||    
T  13448301 ctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcc 13448400  T
Q  279 tgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaaccccta 378  Q
     |||||||||||||| || || || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| ||||||||||||    
T  13448401 cgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaaccccta 13448500  T
Q  379 ataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 434  Q
    || |||||||||||||||   ||||||||||||||||| |||||||| || |||||    
T  13448501 atgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 434
Target Start/End: Original strand, 13440056 - 13440390
Alignment:
Q  97 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 196  Q
    |||||||||||||||||||||||||| ||  ||||||| | ||||| ||||||||||||| ||| |||| |   || ||| || | ||| || ||  |||    
T  13440056 tccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttcca 13440155  T
Q  197 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 296  Q
    | ||||||| ||| |  ||||||| ||  || || ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||    
T  13440156 ctccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctac 13440255  T
Q  297 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 396  Q
    | | || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || ||    
T  13440256 aattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc 13440355  T
Q  397 tttccgatatttctctcttcgaatccctttggcaacca 434  Q
       |  || |||||||||||||||||||||||||||||    
T  13440356 ---ctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 81 - 434
Target Start/End: Original strand, 13454674 - 13455024
Alignment:
Q  81 agcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactca 180  Q
    |||||| ||||||||  ||||||||||||||||||||||||| || |||||  | | ||||| ||||||||||||| ||| |||| ||| || ||| ||     
T  13454674 agcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattct 13454773  T
Q  181 gctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctg 280  Q
    | ||| || ||  | |  ||||||| ||| || |||||||| |  || || ||||| ||||| ||||| || || |||||||| ||||| ||||| ||      
T  13454774 gttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactccca 13454873  T
Q  281 cactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaat 380  Q
      ||||||||||| ||  | || |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| ||||||||||||||    
T  13454874 tgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaat 13454973  T
Q  381 aatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 434  Q
     ||||||||||| ||||   |||| ||| ||||||| |||||||| ||||||||    
T  13454974 gatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 217 - 437
Target Start/End: Complemental strand, 12590375 - 12590152
Alignment:
Q  217 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 316  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  317 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt---ccgatatttctctc 413  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||   || || ||||||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctc 12590176  T
Q  414 ttcgaatccctttggcaaccattt 437  Q
    ||| |||||  | |||||||||||    
T  12590175 ttcaaatccactaggcaaccattt 12590152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 395
Target Start/End: Complemental strand, 12483658 - 12483492
Alignment:
Q  229 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 328  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  329 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 395  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||| ||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 174 - 434
Target Start/End: Complemental strand, 12641727 - 12641467
Alignment:
Q  174 ccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcgga 273  Q
    |||||| | ||| |||||| |||||||||| | ||||||    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||    
T  12641727 ccactctgttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattgga 12641628  T
Q  274 acccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaac 373  Q
    | |||||||||||||||||| ||   ||| ||| |||| ||||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||      
T  12641627 atccctgcactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccact 12641528  T
Q  374 ccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 434  Q
    ||||||| || ||||| ||||| ||| | | |||||||||||||||||| || ||||||||    
T  12641527 ccctaatgataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaacca 12641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 12641820 - 12641751
Alignment:
Q  81 agcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctct 150  Q
    |||||| |||||| | |||||||||||||||||||| ||||| |||||||  || | |||||| ||||||    
T  12641820 agcttcatcaccatcgtccatcaatctcctcacagctttctctatactatgtctactcaccactttctct 12641751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 392
Target Start/End: Original strand, 12540523 - 12540836
Alignment:
Q  79 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccact 178  Q
    |||||||| | ||||||||||||||||||||||| ||||||||| || | ||| || || |||| ||||| |||||||||| ||||| ||| || ||| |    
T  12540523 tcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccatt 12540622  T
Q  179 cagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccc 278  Q
    | | ||| || ||  | || ||||||| ||| ||||||||||| |  || || ||| | || || ||||| ||   ||||||||| ||||| ||||| ||    
T  12540623 ctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcc 12540722  T
Q  279 tgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaaccccta 378  Q
     |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| ||| |||| ||||| ||||||||||||    
T  12540723 cgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaaccccta 12540822  T
Q  379 ataatcaaaccctt 392  Q
    || |||||||||||    
T  12540823 atgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  345 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 430  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 434
Target Start/End: Complemental strand, 3417850 - 3417516
Alignment:
Q  97 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 196  Q
    ||||||||||||||||  |||||||| ||   ||| || | ||||| ||||| ||||||||||||||||  || || ||| || | ||| || ||  |||    
T  3417850 tccatcaatctcctcattgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttcca 3417751  T
Q  197 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 296  Q
    | ||||||| ||| || |||||||| |  || |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| ||||||||||||    
T  3417750 ctccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaac 3417651  T
Q  297 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 396  Q
    |   || |||| ||||||||| ||||||||  | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||   ||||    
T  3417650 aaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttc 3417554  T
Q  397 tttccgatatttctctcttcgaatccctttggcaacca 434  Q
    ||||| || |||||||| || |||||||| ||||||||    
T  3417553 tttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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