View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1524-Insertion-10 (Length: 465)
Name: NF1524-Insertion-10
Description: NF1524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1524-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 32529985 - 32530439
Alignment:
| Q |
10 |
gcgcaactccaatatagagtgtgtcttctccttcatttctttaaacaattattagcattgagacttgtttaccgaattactgaattgctggcatggtaat |
109 |
Q |
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| T |
32529985 |
gcgcaactccaatatagagtgtgtcttctccttcatttctttaaacaattattagcattgagacttctttactgaattactgaattgctggcatggtaat |
32530084 |
T |
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| Q |
110 |
tttattagcctgactctaacaagtaagcaagtaattaagctccctcataagtcttaagtgaaacttaacatttattcctatttagcttattggtttcctt |
209 |
Q |
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| T |
32530085 |
tttattagcctgactctaacaagtaagcaagtaattaagctccctcataagtcttaagtgaaacttaacatttattcctatttagcttattggtttcctt |
32530184 |
T |
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| Q |
210 |
ttgtgatacatttgaaatgaaagcacattcactcaaagatcatggatttcacatcattgttcagctccactatgtttttgactcagttttgggcatttga |
309 |
Q |
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| T |
32530185 |
t--tgatacatttgaaatgaaagcgcattcactcaaagatcatggatttcacatcattgttcagctccactatgtttttaactcagttttgggcatttga |
32530282 |
T |
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| Q |
310 |
cgatccaagttctaagttagtggccttgagaaagggtatcacatatccaagttccaagttcgattcagttttgagcatcacctatcgtttactc------ |
403 |
Q |
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| T |
32530283 |
cgatccaagttctaagttagtggccttgagaaagggtatcaccta-------tccaagttcgatccagttttgagcaccacctatcgtttactcggctaa |
32530375 |
T |
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| Q |
404 |
--ggctttctcatcttatttcttactcaactatttgccaagtccgggtttgaattcgcctcctc |
465 |
Q |
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| T |
32530376 |
ggggcttcctcatcttatttcttactcacctatttgccaagtccgggtttgaattcgcctcctc |
32530439 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 8822016 - 8822096
Alignment:
| Q |
263 |
tcattgttcagctccactatgtttttgactcagttttgggcatttgacgatccaagttctaagttagtggccttgagaaag |
343 |
Q |
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| T |
8822016 |
tcattgttcatttccactatatctttgactcagttttgagtctttgacgacccacgctctgagttagtggcattgagaaag |
8822096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 39046505 - 39046563
Alignment:
| Q |
285 |
ttttgactcagttttgggcatttgacgatccaagttctaagttagtggccttgagaaag |
343 |
Q |
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| T |
39046505 |
ttttgactcagttttaagtctttgacgatccacgttctaggttagtggccttgggaaag |
39046563 |
T |
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